Variant report

Variant	rs545584078
Chromosome Location	chr15:34543394-34543395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:34543362-34543494	K562	blood:	n/a	chr15:34543408-34543417 chr15:34543408-34543417 chr15:34543406-34543419 chr15:34543406-34543419 chr15:34543408-34543417 chr15:34543406-34543417 chr15:34543408-34543417 chr15:34543408-34543419
2	CEBPB	chr15:34543251-34543524	HepG2	liver:	n/a	chr15:34543408-34543417 chr15:34543408-34543417 chr15:34543406-34543419 chr15:34543406-34543419 chr15:34543408-34543417 chr15:34543406-34543417 chr15:34543408-34543417 chr15:34543408-34543419
3	CEBPB	chr15:34543243-34543441	A549	lung:	n/a	chr15:34543408-34543417 chr15:34543408-34543417 chr15:34543406-34543419 chr15:34543406-34543419 chr15:34543408-34543417 chr15:34543406-34543417 chr15:34543408-34543417 chr15:34543408-34543419
4	CEBPB	chr15:34543268-34543526	IMR90	lung:	n/a	chr15:34543408-34543417 chr15:34543408-34543417 chr15:34543406-34543419 chr15:34543406-34543419 chr15:34543408-34543417 chr15:34543406-34543417 chr15:34543408-34543417 chr15:34543408-34543419

No.	Distal block	Cell Line	Cell type
1	chr15:34542486..34546422-chr15:34628917..34632698,3	K562	blood:
2	chr15:34542779..34546131-chr15:34549180..34553108,3	K562	blood:
3	chr15:34520473..34523178-chr15:34541838..34543586,2	K562	blood:
4	chr15:34543302..34545799-chr15:34603176..34605145,2	K562	blood:
5	chr15:34542868..34546239-chr15:34629699..34632698,3	K562	blood:
6	chr15:34516892..34518970-chr15:34542001..34544028,2	K562	blood:
7	chr15:34539135..34541437-chr15:34542575..34545570,3	K562	blood:
8	chr15:34536358..34538265-chr15:34542430..34544834,2	K562	blood:

Variant related genes	Relation type
ENSG00000259468	TF binding region
ENSG00000140199	Chromatin interaction
ENSG00000128463	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34518000-34571800	Weak transcription	Stomach Mucosa	stomach
2	chr15:34518800-34548200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:34519000-34552400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:34519200-34552200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:34519200-34553600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:34519400-34552200	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr15:34519400-34552200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:34519600-34544200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:34519600-34553600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:34519800-34544800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:34520200-34555600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:34521000-34547800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:34523000-34545600	Weak transcription	Dnd41	blood
14	chr15:34524200-34552400	Strong transcription	Primary B cells from cord blood	blood
15	chr15:34524800-34553600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr15:34528400-34546400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:34528400-34547400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:34528600-34554600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:34529000-34543800	Weak transcription	Right Ventricle	heart
20	chr15:34529000-34554800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:34529200-34544000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:34529200-34546000	Weak transcription	Gastric	stomach
23	chr15:34529200-34550400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:34529200-34552200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:34529800-34544000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:34529800-34546200	Weak transcription	Esophagus	oesophagus
27	chr15:34531400-34546000	Weak transcription	Spleen	Spleen
28	chr15:34531400-34546400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:34532000-34546000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:34532600-34543800	Weak transcription	HSMM	muscle
31	chr15:34533000-34544200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:34533000-34545800	Weak transcription	Hela-S3	cervix
33	chr15:34533000-34548400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:34533000-34555600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:34533000-34556600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr15:34533000-34564000	Weak transcription	NHLF	lung
37	chr15:34533200-34544000	Weak transcription	Fetal Lung	lung
38	chr15:34533200-34544000	Weak transcription	NHDF-Ad	bronchial
39	chr15:34533200-34547200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr15:34533200-34548200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:34533200-34549400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:34533200-34551200	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:34533200-34557400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:34533200-34562800	Weak transcription	Pancreas	Pancrea
45	chr15:34533400-34545200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:34534000-34546400	Weak transcription	Fetal Kidney	kidney
47	chr15:34534400-34546400	Weak transcription	Fetal Heart	heart
48	chr15:34534800-34544800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:34535200-34552200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:34535400-34551200	Strong transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links