Variant report

Variant	rs545754366
Chromosome Location	chr12:123468308-123468309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:123467355-123468402	GM12892	blood:	n/a	n/a
2	POLR2A	chr12:123468291-123468414	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr12:123467481-123470043	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr12:123468278-123469717	U87	brain:	n/a	n/a
5	POLR2A	chr12:123462020-123470019	SK-N-MC	brain:	n/a	n/a
6	POLR2A	chr12:123466333-123470624	K562	blood:	n/a	n/a
7	POLR2A	chr12:123467600-123469651	HepG2	liver:	n/a	n/a
8	POLR2A	chr12:123467292-123468736	HCT-116	colon:	n/a	n/a
9	POLR2A	chr12:123467447-123468502	HepG2	liver:	n/a	n/a
10	POLR2A	chr12:123466896-123469748	PFSK-1	brain:	n/a	n/a
11	POLR2A	chr12:123467205-123469730	HL-60	blood:	n/a	n/a
12	POLR2A	chr12:123463863-123469964	PFSK-1	brain:	n/a	n/a
13	POLR2A	chr12:123467838-123469667	HUVEC	blood vessel:	n/a	n/a
14	POLR2A	chr12:123468021-123470507	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr12:123467522-123468433	HL-60	blood:	n/a	n/a
16	POLR2A	chr12:123466981-123470521	GM12878	blood:	n/a	n/a
17	POLR2A	chr12:123468091-123469679	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr12:123468284-123469711	U87	brain:	n/a	n/a
19	POLR2A	chr12:123466949-123469534	K562	blood:	n/a	n/a
20	POLR2A	chr12:123467406-123470505	HepG2	liver:	n/a	n/a
21	POLR2A	chr12:123466468-123469539	PANC-1	pancreas:	n/a	n/a
22	POLR2A	chr12:123468006-123468501	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr12:123461706-123470094	K562	blood:	n/a	n/a
24	POLR2A	chr12:123466890-123470357	K562	blood:	n/a	n/a
25	POLR2A	chr12:123462647-123470505	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr12:123468307-123468634	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:123467975..123470307-chr12:123638971..123640597,2	MCF-7	breast:
2	chr12:123468264..123470538-chr12:123712723..123715235,2	MCF-7	breast:
3	chr12:123467419..123469042-chr12:123713866..123715628,2	K562	blood:
4	chr12:123467378..123471463-chr12:123484194..123486166,3	MCF-7	breast:
5	chr12:123467906..123470215-chr12:123495247..123497244,2	K562	blood:
6	chr12:123468080..123470439-chr12:123573373..123575937,2	K562	blood:
7	chr12:123467368..123470978-chr12:123525099..123527744,3	K562	blood:
8	chr12:123356737..123358240-chr12:123467000..123469929,2	MCF-7	breast:
9	chr12:123465881..123468570-chr12:123716034..123719414,3	K562	blood:

No data

Variant related genes	Relation type
ABCB9	TF binding region
ENSG00000265526	Chromatin interaction
ENSG00000130921	Chromatin interaction
ENSG00000051825	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388790	chr12:123275902-123655103	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv899572	chr12:123292503-123477311	Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv899573	chr12:123312051-123528405	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv517200	chr12:123312051-123654498	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv899576	chr12:123335527-123528405	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv832532	chr12:123395927-123573137	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv832533	chr12:123395927-123589290	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv427924	chr12:123412172-123722059	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
9	nsv455732	chr12:123427573-123574838	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv560492	chr12:123427573-123574838	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv899577	chr12:123435248-123484474	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv899578	chr12:123459005-123474529	Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv560493	chr12:123467325-123479623	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123461400-123473200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:123466000-123469800	Enhancers	Fetal Heart	heart
3	chr12:123466200-123468600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:123466400-123468800	Genic enhancers	K562	blood
5	chr12:123466400-123470200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
6	chr12:123466400-123473400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:123466600-123468400	Genic enhancers	Esophagus	oesophagus
8	chr12:123466600-123469000	Genic enhancers	Pancreas	Pancrea
9	chr12:123466600-123469200	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr12:123466600-123469400	Enhancers	NHDF-Ad	bronchial
11	chr12:123466600-123469600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:123466600-123469800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:123466600-123470000	Genic enhancers	Lung	lung
14	chr12:123466600-123470000	Enhancers	Right Atrium	heart
15	chr12:123466600-123470600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:123466600-123471400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr12:123466600-123483400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:123466800-123469000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr12:123466800-123469600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr12:123466800-123469800	Enhancers	NH-A	brain
21	chr12:123466800-123470000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:123466800-123470200	Genic enhancers	Fetal Muscle Trunk	muscle
23	chr12:123466800-123470400	Genic enhancers	Fetal Stomach	stomach
24	chr12:123466800-123471000	Genic enhancers	Liver	Liver
25	chr12:123466800-123472000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:123466800-123472400	Genic enhancers	Spleen	Spleen
27	chr12:123466800-123516000	Weak transcription	Small Intestine	intestine
28	chr12:123467000-123468400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr12:123467000-123468600	Weak transcription	Ovary	ovary
30	chr12:123467000-123468800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr12:123467000-123468800	Genic enhancers	Brain Anterior Caudate	brain
32	chr12:123467000-123469000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
33	chr12:123467000-123469600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr12:123467000-123469600	Genic enhancers	Rectal Mucosa Donor 29	rectum
35	chr12:123467000-123469800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr12:123467000-123469800	Genic enhancers	Placenta	Placenta
37	chr12:123467000-123469800	Enhancers	HUVEC	blood vessel
38	chr12:123467000-123470200	Enhancers	Brain Angular Gyrus	brain
39	chr12:123467000-123470200	Genic enhancers	Fetal Muscle Leg	muscle
40	chr12:123467000-123470400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr12:123467000-123474000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr12:123467200-123468600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr12:123467200-123468600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
44	chr12:123467200-123468800	Enhancers	Primary T cells from cord blood	blood
45	chr12:123467200-123469200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr12:123467200-123469200	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr12:123467200-123469200	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr12:123467200-123469600	Genic enhancers	Primary T cells fromperipheralblood	blood
49	chr12:123467200-123469600	Genic enhancers	Colonic Mucosa	Colon
50	chr12:123467200-123469800	Genic enhancers	Fetal Intestine Large	intestine

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