Variant report

Variant	rs545762197
Chromosome Location	chr12:116861175-116861176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:116827133..116831140-chr12:116860978..116865806,7	MCF-7	breast:
2	chr12:116713061..116717108-chr12:116860033..116868382,13	MCF-7	breast:
3	chr12:116715734..116717638-chr12:116859519..116862412,2	K562	blood:
4	chr12:116842396..116845943-chr12:116861127..116865065,6	MCF-7	breast:
5	chr12:116858487..116861444-chr12:116862668..116866712,3	K562	blood:
6	chr12:116857980..116859538-chr12:116859548..116861862,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264037	Chromatin interaction
ENSG00000123066	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv973993	chr12:116861012-116874861	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116844800-116862400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:116854200-116864000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:116854400-116863600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:116855000-116863200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:116859000-116863200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr12:116860200-116863000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:116860200-116863200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:116860200-116864400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:116860600-116861400	Enhancers	Colon Smooth Muscle	Colon
10	chr12:116860600-116861400	Enhancers	Fetal Stomach	stomach
11	chr12:116860600-116861400	Enhancers	NHDF-Ad	bronchial
12	chr12:116860600-116861600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:116860600-116861600	Enhancers	Fetal Intestine Large	intestine
14	chr12:116860800-116861200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:116860800-116861400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:116860800-116861400	Enhancers	Fetal Intestine Small	intestine
17	chr12:116860800-116861400	Enhancers	Fetal Lung	lung
18	chr12:116860800-116861400	Enhancers	Placenta	Placenta
19	chr12:116860800-116861400	Enhancers	Ovary	ovary
20	chr12:116860800-116861400	Enhancers	Osteobl	bone
21	chr12:116860800-116861600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr12:116860800-116861600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr12:116860800-116861800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr12:116861000-116861200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr12:116861000-116861200	Enhancers	A549	lung
26	chr12:116861000-116861400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr12:116861000-116863600	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links