Variant report

Variant	rs545999380
Chromosome Location	chr1:92969747-92969748
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1004381	chr1:92968173-93064823	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92952800-92991400	Weak transcription	Pancreas	Pancrea
2	chr1:92961600-92969800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:92967400-92969800	Enhancers	Dnd41	blood
4	chr1:92967800-92970000	Enhancers	HMEC	breast
5	chr1:92967800-92978400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:92967800-92986000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:92968000-92970000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:92968200-92975200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:92968200-92977400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:92968200-93042800	Weak transcription	HSMM	muscle
11	chr1:92968400-92997600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:92968600-92971800	Enhancers	Fetal Thymus	thymus
13	chr1:92969000-92969800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:92969000-92969800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:92969000-92970200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:92969000-92971400	Enhancers	Thymus	Thymus
17	chr1:92969200-92970800	Enhancers	GM12878-XiMat	blood
18	chr1:92969200-92970800	Flanking Active TSS	HepG2	liver
19	chr1:92969400-92969800	Enhancers	NH-A	brain
20	chr1:92969400-92969800	Flanking Active TSS	Osteobl	bone
21	chr1:92969400-92970000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:92969400-92979800	Weak transcription	HSMMtube	muscle
23	chr1:92969600-92970000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:92969600-92970200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr1:92969600-92970600	Enhancers	Primary B cells from cord blood	blood
26	chr1:92969600-92970800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr1:92969600-92984200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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