Variant report

Variant	rs546034491
Chromosome Location	chr11:76469266-76469267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76466515..76473526-chr11:76475390..76481084,8	K562	blood:
2	chr11:76468895..76471545-chr11:76491022..76493551,2	K562	blood:
3	chr11:76457514..76460124-chr11:76468465..76470695,2	MCF-7	breast:
4	chr11:76465635..76468118-chr11:76468545..76471163,2	K562	blood:
5	chr11:76458614..76461290-chr11:76467564..76470157,3	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TSKU-2	chr11:76469093-76469327	XLOC_009221
2	lnc-TSKU-2	chr11:76469093-76469359	XLOC_009221
3	lnc-TSKU-2	chr11:76469093-76469359	XLOC_009221

No data

Variant related genes	Relation type
ENSG00000254632	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382348	chr11:76468881-76469334	Weak transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76457000-76474600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76459000-76469600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76461000-76473800	Weak transcription	Small Intestine	intestine
4	chr11:76464000-76469400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:76464200-76469600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:76464200-76469800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:76464200-76470000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:76464200-76473600	Weak transcription	Right Ventricle	heart
9	chr11:76464600-76469800	Weak transcription	K562	blood
10	chr11:76464800-76470400	Weak transcription	A549	lung
11	chr11:76464800-76474000	Weak transcription	Left Ventricle	heart
12	chr11:76464800-76474000	Weak transcription	Spleen	Spleen
13	chr11:76464800-76474200	Weak transcription	Fetal Lung	lung
14	chr11:76465200-76469600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:76465200-76473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:76465400-76470200	Weak transcription	Placenta	Placenta
17	chr11:76465400-76474200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:76467400-76470400	Enhancers	Fetal Brain Male	brain
19	chr11:76467600-76469600	Weak transcription	Esophagus	oesophagus
20	chr11:76467800-76478400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:76468000-76469600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:76468000-76469600	Enhancers	Brain Germinal Matrix	brain
23	chr11:76468000-76474400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:76468200-76474200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:76468400-76469800	Enhancers	Fetal Muscle Trunk	muscle
26	chr11:76468400-76470000	Enhancers	Fetal Brain Female	brain
27	chr11:76468400-76470000	Weak transcription	Stomach Mucosa	stomach
28	chr11:76468400-76470200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:76468600-76470000	Enhancers	Fetal Heart	heart
30	chr11:76468800-76474400	Weak transcription	HSMMtube	muscle
31	chr11:76469000-76472600	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:76469200-76473400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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