Variant report

Variant	rs546079702
Chromosome Location	chr3:119892699-119892700
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119888337..119890858-chr3:119891647..119894832,5	MCF-7	breast:
2	chr3:119887283..119893170-chr3:119894592..119900399,7	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv829697	chr3:119802856-119918435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv877376	chr3:119824037-120119446	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv3967	chr3:119857708-119903115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv1013788	chr3:119866722-119912297	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv3403309	chr3:119892062-119896360	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv3415488	chr3:119892539-119893134	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119875200-119896000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:119883200-119895800	Weak transcription	Fetal Intestine Small	intestine
3	chr3:119884800-119895600	Weak transcription	Brain Germinal Matrix	brain
4	chr3:119885000-119895800	Weak transcription	Fetal Lung	lung
5	chr3:119887200-119895800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:119888400-119895800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:119888400-119895800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:119888400-119896200	Enhancers	NHDF-Ad	bronchial
9	chr3:119888600-119893200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:119888600-119896000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:119889400-119893600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:119890000-119893000	Weak transcription	A549	lung
13	chr3:119890000-119895800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:119890400-119893600	Weak transcription	Placenta	Placenta
15	chr3:119890400-119895400	Weak transcription	Psoas Muscle	Psoas
16	chr3:119890400-119895800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:119890400-119895800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:119890600-119893600	Weak transcription	Hela-S3	cervix
19	chr3:119890600-119895600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:119890600-119895800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:119890800-119895600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:119890800-119896000	Weak transcription	Right Atrium	heart
23	chr3:119891000-119895800	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:119891200-119893200	Weak transcription	HMEC	breast
25	chr3:119891200-119895600	Weak transcription	Adipose Nuclei	Adipose
26	chr3:119891200-119895600	Weak transcription	Fetal Muscle Leg	muscle
27	chr3:119891400-119895200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:119891400-119895200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:119891400-119895600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:119891400-119895600	Weak transcription	NHLF	lung
31	chr3:119891400-119896200	Weak transcription	Lung	lung
32	chr3:119892000-119892800	Enhancers	HSMM	muscle
33	chr3:119892000-119895800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr3:119892200-119893400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:119892200-119893600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:119892200-119895600	Weak transcription	NHEK	skin
37	chr3:119892200-119895800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:119892200-119896000	Weak transcription	Fetal Stomach	stomach
39	chr3:119892400-119914200	Weak transcription	Fetal Brain Female	brain
40	chr3:119892600-119892800	Enhancers	HSMMtube	muscle
41	chr3:119892600-119893000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:119892600-119893600	Weak transcription	Osteobl	bone

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