Variant report

Variant	rs546403
Chromosome Location	chr11:57027758-57027759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12296071	1.00[AMR][1000 genomes]
rs1262323	1.00[AMR][1000 genomes]
rs2508769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2508771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2511025	0.87[AFR][1000 genomes]
rs2846040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846046	0.91[AFR][1000 genomes]
rs2846047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2851723	0.87[AFR][1000 genomes]
rs2851724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs481516	1.00[AMR][1000 genomes]
rs499885	0.91[AFR][1000 genomes]
rs501160	1.00[AMR][1000 genomes]
rs558266	0.87[AFR][1000 genomes]
rs559168	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs578831	0.91[AFR][1000 genomes]
rs639248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs641550	1.00[AMR][1000 genomes]
rs652353	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs655402	0.91[AFR][1000 genomes]
rs656366	0.87[AFR][1000 genomes]
rs670919	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57018200-57028800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:57023600-57028400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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