Variant report

Variant	rs546470523
Chromosome Location	chr8:99292140-99292141
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99240600-99294200	Weak transcription	Ovary	ovary
2	chr8:99260400-99304400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:99265400-99298400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr8:99265400-99304200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr8:99284600-99304600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:99284800-99304600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:99287600-99305000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:99287800-99303600	Weak transcription	Fetal Stomach	stomach
9	chr8:99289000-99297800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr8:99289000-99303400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:99290800-99305400	Weak transcription	Aorta	Aorta
12	chr8:99291000-99297800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:99291200-99295800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:99291400-99305400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:99291800-99292200	Enhancers	NHDF-Ad	bronchial
16	chr8:99291800-99298400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:99291800-99304000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:99292000-99292600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:99292000-99297000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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