Variant report

Variant	rs546629399
Chromosome Location	chr1:93274322-93274323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv947289	chr1:93251307-93276080	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv530047	chr1:93273425-93308213	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93271000-93276000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:93271800-93276800	Weak transcription	K562	blood
3	chr1:93272600-93276000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:93273000-93275000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:93273000-93275200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:93273400-93275000	Enhancers	HMEC	breast
7	chr1:93273400-93275000	Enhancers	NHEK	skin
8	chr1:93273600-93274400	Enhancers	Osteobl	bone
9	chr1:93273600-93274600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:93273600-93275000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:93273600-93275000	Enhancers	Placenta	Placenta
12	chr1:93273600-93275000	Enhancers	Hela-S3	cervix
13	chr1:93274000-93274400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:93274000-93275800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:93274200-93274600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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