Variant report

Variant	rs546718334
Chromosome Location	chr5:94956261-94956262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94889800..94892273-chr5:94955578..94957837,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198677	Chromatin interaction
ENSG00000164291	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3421596	chr5:94954196-94958694	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1823097	chr5:94955602-94956753	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1840660	chr5:94955602-94956753	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv598956	chr5:94955602-94956831	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1842645	chr5:94955602-94962981	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3340930	chr5:94955821-94958369	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv823145	chr5:94955997-94957264	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv10492	chr5:94956239-94956904	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94954800-94958600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:94955000-94956400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr5:94955000-94957600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:94955000-94957600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr5:94955200-94956400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
6	chr5:94955200-94957000	Flanking Active TSS	HUVEC	blood vessel
7	chr5:94955200-94957200	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr5:94955200-94957200	Flanking Active TSS	NH-A	brain
9	chr5:94955200-94957400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr5:94955200-94957600	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr5:94955200-94957600	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr5:94955200-94957800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr5:94955400-94956400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:94955400-94956400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
15	chr5:94955400-94956400	Flanking Active TSS	Liver	Liver
16	chr5:94955400-94956400	Flanking Active TSS	Placenta	Placenta
17	chr5:94955400-94956400	Active TSS	Right Atrium	heart
18	chr5:94955400-94957000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr5:94955400-94957200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:94955400-94957400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:94955400-94957400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:94955400-94957400	Active TSS	Brain Cingulate Gyrus	brain
23	chr5:94955400-94957400	Active TSS	Brain Substantia Nigra	brain
24	chr5:94955400-94957400	Active TSS	Psoas Muscle	Psoas
25	chr5:94955400-94957600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr5:94955400-94957600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
27	chr5:94955400-94957600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr5:94955400-94957600	Active TSS	Brain Angular Gyrus	brain
29	chr5:94955400-94957600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr5:94955400-94957800	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr5:94955400-94958200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr5:94955600-94956400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
33	chr5:94955600-94956400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:94955600-94956400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr5:94955600-94956400	Flanking Active TSS	GM12878-XiMat	blood
36	chr5:94955600-94956800	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr5:94955600-94957000	Active TSS	HSMMtube	muscle
38	chr5:94955600-94957200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:94955600-94957200	Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr5:94955600-94957200	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr5:94955600-94957200	Bivalent/Poised TSS	Fetal Brain Female	brain
42	chr5:94955600-94957200	Bivalent/Poised TSS	A549	lung
43	chr5:94955600-94957400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
44	chr5:94955600-94957400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr5:94955600-94957400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:94955600-94957400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr5:94955600-94957400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr5:94955600-94957400	Active TSS	Aorta	Aorta
49	chr5:94955600-94957400	Flanking Active TSS	Colonic Mucosa	Colon
50	chr5:94955600-94957400	Flanking Active TSS	Lung	lung

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