Variant report

Variant	rs546753980
Chromosome Location	chr8:62702604-62702605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:62695864..62698951-chr8:62699602..62703703,4	MCF-7	breast:
2	chr8:62695224..62699068-chr8:62699344..62704229,5	MCF-7	breast:
3	chr8:62626145..62628545-chr8:62702467..62704039,2	MCF-7	breast:
4	chr8:62625727..62627916-chr8:62702599..62704748,2	K562	blood:

Variant related genes	Relation type
ENSG00000264408	Chromatin interaction
ENSG00000254119	Chromatin interaction
ENSG00000198363	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv3363755	chr8:62702301-62764282	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62698600-62704800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:62699200-62703000	Enhancers	A549	lung
3	chr8:62701800-62702800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:62701800-62703800	Enhancers	K562	blood
5	chr8:62702000-62702800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:62702000-62702800	Flanking Active TSS	Hela-S3	cervix
7	chr8:62702000-62703000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:62702000-62703000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:62702000-62703000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:62702000-62703000	Enhancers	Placenta	Placenta
11	chr8:62702200-62702800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:62702200-62702800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:62702200-62702800	Enhancers	HMEC	breast
14	chr8:62702200-62702800	Enhancers	Osteobl	bone
15	chr8:62702200-62703000	Enhancers	NHDF-Ad	bronchial
16	chr8:62702200-62704000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:62702400-62702800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:62702400-62702800	Enhancers	Ovary	ovary
19	chr8:62702400-62702800	Enhancers	HepG2	liver
20	chr8:62702400-62703000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:62702400-62703000	Enhancers	NHLF	lung

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