Variant report

Variant	rs546761290
Chromosome Location	chr12:39810505-39810506
allele	-/AT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:39810025..39813517-chr12:39819590..39821395,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3361042	chr12:39809685-39811733	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39785000-39829200	Weak transcription	K562	blood
2	chr12:39790000-39816200	Weak transcription	Right Ventricle	heart
3	chr12:39794200-39824800	Weak transcription	Right Atrium	heart
4	chr12:39795400-39816600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:39797600-39812000	Weak transcription	HMEC	breast
6	chr12:39800800-39812000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:39800800-39814800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr12:39801000-39815800	Weak transcription	Psoas Muscle	Psoas
9	chr12:39801600-39811000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr12:39802000-39811800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:39802400-39816000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:39804000-39811800	Weak transcription	Adipose Nuclei	Adipose
13	chr12:39805200-39811800	Weak transcription	HepG2	liver
14	chr12:39806400-39813000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:39806600-39811800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr12:39806600-39834200	Weak transcription	Hela-S3	cervix
17	chr12:39807200-39811400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:39808600-39811800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:39808600-39812400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:39808600-39813000	Weak transcription	Brain Germinal Matrix	brain
21	chr12:39808600-39814000	Weak transcription	Brain Angular Gyrus	brain
22	chr12:39808600-39814800	Weak transcription	Brain Hippocampus Middle	brain
23	chr12:39808600-39821600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr12:39808600-39830800	Weak transcription	Fetal Brain Female	brain
25	chr12:39809400-39815200	Weak transcription	Left Ventricle	heart
26	chr12:39809600-39813600	Weak transcription	Placenta	Placenta
27	chr12:39809600-39813800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr12:39809800-39813600	Weak transcription	GM12878-XiMat	blood
29	chr12:39810000-39811000	Weak transcription	Colon Smooth Muscle	Colon
30	chr12:39810000-39813600	Weak transcription	A549	lung
31	chr12:39810000-39821000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr12:39810200-39812400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr12:39810200-39816000	Weak transcription	Fetal Heart	heart

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