Variant report

Variant	rs546945438
Chromosome Location	chr1:172837053-172837054
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172820600-172840200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:172828600-172840600	Weak transcription	A549	lung
3	chr1:172828800-172840200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:172831200-172844000	Weak transcription	HUVEC	blood vessel
5	chr1:172836000-172837600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:172836000-172837600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr1:172836400-172837400	Enhancers	Primary T cells from cord blood	blood
8	chr1:172836400-172837400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:172836600-172837200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:172836800-172837200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:172837000-172840200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:172837000-172844000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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