Variant report

Variant	rs547508169
Chromosome Location	chr3:24870282-24870283
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24870259..24872185-chr3:24874165..24877170,4	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv834643	chr3:24779627-24942886	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv876629	chr3:24813960-24875084	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv3734	chr3:24861568-24906866	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24869800-24870400	Enhancers	Fetal Lung	lung
2	chr3:24869800-24870400	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chr3:24870000-24870400	Bivalent Enhancer	Fetal Stomach	stomach
4	chr3:24870200-24870400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:24870200-24870400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:24870200-24870400	Bivalent Enhancer	Brain Germinal Matrix	brain
7	chr3:24870200-24870400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:24870200-24870400	Enhancers	Brain Substantia Nigra	brain
9	chr3:24870200-24870400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
10	chr3:24870200-24870400	Bivalent Enhancer	Esophagus	oesophagus
11	chr3:24870200-24870400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr3:24870200-24870400	Enhancers	Psoas Muscle	Psoas
13	chr3:24870200-24870400	Enhancers	Rectal Smooth Muscle	rectum
14	chr3:24870200-24870600	Bivalent Enhancer	Liver	Liver
15	chr3:24870200-24870600	Flanking Active TSS	Brain Hippocampus Middle	brain
16	chr3:24870200-24870600	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr3:24870200-24870600	Bivalent Enhancer	Fetal Brain Male	brain
18	chr3:24870200-24870800	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr3:24870200-24872200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:24870200-24872600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr3:24870200-24872600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
22	chr3:24870200-24872600	Active TSS	Brain Angular Gyrus	brain
23	chr3:24870200-24872800	Active TSS	Brain Anterior Caudate	brain

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