Variant report

Variant	rs547770615
Chromosome Location	chr8:99848444-99848445
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	esv3357563	chr8:99846837-99848644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99837800-99848600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:99838800-99862800	Weak transcription	Ovary	ovary
3	chr8:99844800-99848600	Enhancers	Placenta	Placenta
4	chr8:99847200-99857200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:99847400-99848800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:99847600-99848600	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr8:99847600-99848800	Enhancers	HepG2	liver
8	chr8:99847800-99849000	Enhancers	Dnd41	blood
9	chr8:99847800-99849200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:99847800-99855000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:99848000-99849200	Weak transcription	A549	lung
12	chr8:99848000-99849400	Enhancers	Hela-S3	cervix
13	chr8:99848000-99849400	Enhancers	NHEK	skin
14	chr8:99848000-99850000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:99848200-99848600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:99848200-99849200	Weak transcription	Fetal Intestine Large	intestine
17	chr8:99848400-99849000	Active TSS	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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