Variant report

Variant	rs548145977
Chromosome Location	chr12:117000057-117000058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040904	chr12:116999897-117033944	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116997400-117001800	Weak transcription	Fetal Lung	lung
2	chr12:116997800-117000200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr12:116997800-117000200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr12:116997800-117000600	Weak transcription	Stomach Mucosa	stomach
5	chr12:116998000-117001800	Weak transcription	NHEK	skin
6	chr12:116998200-117000200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:116998600-117000400	Enhancers	Dnd41	blood
8	chr12:116998800-117000600	Weak transcription	Thymus	Thymus
9	chr12:116999600-117000200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr12:116999600-117000400	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links