Variant report

Variant	rs548249144
Chromosome Location	chr12:86431195-86431196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832476	chr12:86389751-86497122	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv798	chr12:86399822-86447451	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv559668	chr12:86416212-86432115	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv559669	chr12:86425608-86431985	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
8	esv3497686	chr12:86425964-86433024	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
9	nsv820997	chr12:86425986-86434829	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
10	esv3497697	chr12:86426012-86433004	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
11	esv3384419	chr12:86426065-86432935	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
12	esv3497675	chr12:86426090-86432920	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
13	esv17358	chr12:86426094-86433836	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
14	esv3497708	chr12:86426104-86432917	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
15	nsv559671	chr12:86428079-86431985	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
16	nsv559672	chr12:86428079-86432115	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
17	nsv559673	chr12:86428079-86432291	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
18	nsv559674	chr12:86428079-86432662	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
19	nsv559675	chr12:86428185-86431985	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
20	nsv559676	chr12:86428579-86432291	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
21	nsv559677	chr12:86428579-86432662	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
22	nsv559678	chr12:86428947-86431985	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
23	nsv559679	chr12:86428947-86432115	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
24	nsv559680	chr12:86428947-86432225	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
25	nsv559681	chr12:86428947-86432662	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
26	nsv559682	chr12:86429900-86432115	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86430800-86433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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