Variant report

Variant	rs548256819
Chromosome Location	chr11:56239108-56239109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:56239108-56239158	HPAEpiC	pulmonary alveolar:	n/a
2	chr11:56239108-56239158	PrEC	prostate:	n/a
3	chr11:56239108-56239158	SK-N-MC	brain:	n/a
4	chr11:56239108-56239158	CMK	blood:	n/a
5	chr11:56239108-56239158	U87	brain:	n/a
6	chr11:56239108-56239158	Hepatocyte	liver:	n/a
7	chr11:56239108-56239158	HIPEpiC	eye:	n/a
8	chr11:56239108-56239158	NHBE	bronchial:	n/a
9	chr11:56239108-56239158	HEK293	kidney:	embryo
10	chr11:56239108-56239158	HAEpiC	amniotic membrane:	n/a
11	chr11:56239108-56239158	NT2-D1	testis:	n/a
12	chr11:56239108-56239158	HUVEC	blood vessel:	n/a
13	chr11:56239108-56239158	NB4	blood:	n/a
14	chr11:56239108-56239158	AG04450	lung:	fetal
15	chr11:56239108-56239158	Hela-S3	cervix:	n/a
16	chr11:56239108-56239158	AG10803	skin:	n/a
17	chr11:56239108-56239158	SKMC	muscle:	n/a
18	chr11:56239108-56239158	BJ	skin:	n/a
19	chr11:56239108-56239158	GM06990	blood:	n/a
20	chr11:56239108-56239158	HCT-116	colon:	n/a
21	chr11:56239108-56239158	AG09309	skin:	n/a
22	chr11:56239108-56239158	IMR90	lung:	fetal
23	chr11:56239108-56239158	GM12892	blood:	n/a
24	chr11:56239108-56239158	HRE	kidney:	n/a
25	chr11:56239108-56239158	GM12878	blood:	n/a
26	chr11:56239108-56239158	HCM	heart:	n/a
27	chr11:56239108-56239158	NH-A	brain:	n/a
28	chr11:56239108-56239158	SK-N-SH_RA	brain:	n/a
29	chr11:56239108-56239158	PFSK-1	brain:	n/a
30	chr11:56239108-56239158	K562	blood:	n/a
31	chr11:56239108-56239158	NHDF-neo	bronchial:	n/a
32	chr11:56239108-56239158	LNCaP	prostate:	n/a
33	chr11:56239108-56239158	ProgFib	skin:	n/a
34	chr11:56239108-56239158	T-47D	breast:	n/a
35	chr11:56239108-56239158	HEEpiC	esophagus:	n/a
36	chr11:56239108-56239158	HCPEpiC	choroid plexus:	n/a
37	chr11:56239108-56239158	BE2_C	brain:	n/a
38	chr11:56239108-56239158	GM19239	blood:	n/a
39	chr11:56239108-56239158	PANC-1	pancreas:	n/a
40	chr11:56239108-56239158	ovcar-3	ovarian:	n/a
41	chr11:56239108-56239158	HNPCEpiC	eye:	n/a
42	chr11:56239108-56239158	Jurkat	blood:	n/a
43	chr11:56239108-56239158	HCF	heart:	n/a
44	chr11:56239108-56239158	HRPEpiC	eye:	n/a
45	chr11:56239108-56239158	RPTEC	kidney:	n/a
46	chr11:56239108-56239158	HMEC	breast:	n/a
47	chr11:56239108-56239158	GM12891	blood:	n/a
48	chr11:56239108-56239158	Caco-2	colon:	n/a
49	chr11:56239108-56239158	ECC-1	luminal epithelium:	n/a
50	chr11:56239108-56239158	MCF10A-Er-Src	breast:	n/a

No data

Variant related genes	Relation type
OR5M3	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv825907	chr11:56236449-56239793	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
6	nsv825909	chr11:56236529-56239793	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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