Variant report

Variant	rs548403344
Chromosome Location	chr11:57008798-57008799
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:57008056-57008831	SH-SY5Y	brain:	n/a	chr11:57008457-57008466
2	GATA3	chr11:57008120-57008815	SK-N-SH	brain:	n/a	chr11:57008457-57008466
3	POLR2A	chr11:57008395-57008898	K562	blood:	n/a	n/a
4	EP300	chr11:57007219-57009560	SK-N-SH	brain:	n/a	chr11:57009230-57009240 chr11:57008593-57008607 chr11:57007390-57007397
5	MXI1	chr11:57007471-57009654	SK-N-SH	brain:	n/a	n/a
6	GATA3	chr11:57008112-57008883	SK-N-SH	brain:	n/a	chr11:57008457-57008466
7	TCF12	chr11:57008040-57008905	SK-N-SH	brain:	n/a	chr11:57008485-57008492
8	GATA2	chr11:57008029-57008992	SH-SY5Y	brain:	n/a	chr11:57008928-57008936 chr11:57008457-57008466

Variant related genes	Relation type
APLNR	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3373066	chr11:57007276-57011574	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57004200-57009200	Weak transcription	Gastric	stomach
2	chr11:57005000-57009200	Weak transcription	Fetal Lung	lung
3	chr11:57005200-57009000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:57005200-57009200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:57005200-57009200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:57005200-57009200	Weak transcription	Adipose Nuclei	Adipose
7	chr11:57005200-57009200	Weak transcription	Left Ventricle	heart
8	chr11:57005200-57009200	Weak transcription	Lung	lung
9	chr11:57005200-57009800	Enhancers	K562	blood
10	chr11:57005200-57016400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:57005400-57010000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:57005600-57009200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:57006800-57009200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:57006800-57009600	Enhancers	Liver	Liver
15	chr11:57006800-57010400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:57007000-57008800	Enhancers	Stomach Smooth Muscle	stomach
17	chr11:57007000-57009400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:57007000-57010000	Enhancers	A549	lung
19	chr11:57007200-57011400	Enhancers	Fetal Muscle Leg	muscle
20	chr11:57007400-57009000	Weak transcription	Brain Anterior Caudate	brain
21	chr11:57007400-57010400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:57007400-57010400	Enhancers	HSMMtube	muscle
23	chr11:57007600-57010000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:57007600-57010000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:57007600-57010800	Enhancers	Fetal Muscle Trunk	muscle
26	chr11:57007600-57011200	Enhancers	Placenta	Placenta
27	chr11:57007800-57008800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:57007800-57009000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr11:57007800-57009600	Weak transcription	HSMM	muscle
30	chr11:57007800-57010200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:57008200-57010000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:57008200-57010200	Enhancers	Right Atrium	heart
33	chr11:57008200-57010400	Enhancers	Fetal Stomach	stomach
34	chr11:57008200-57010600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
35	chr11:57008400-57009400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:57008400-57010000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:57008400-57011600	Enhancers	Spleen	Spleen
38	chr11:57008600-57009000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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