Variant report

Variant	rs548461557
Chromosome Location	chr2:128178711-128178712
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583036	chr2:128173819-128183914	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875013	chr2:128177974-128183145	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128174000-128180600	Weak transcription	Right Atrium	heart
2	chr2:128174800-128180400	Weak transcription	Spleen	Spleen
3	chr2:128175000-128180000	Weak transcription	Primary B cells from cord blood	blood
4	chr2:128176200-128179800	Weak transcription	Dnd41	blood
5	chr2:128176400-128180400	Weak transcription	Pancreas	Pancrea
6	chr2:128176800-128179800	Weak transcription	Gastric	stomach
7	chr2:128177800-128179800	Enhancers	Fetal Thymus	thymus
8	chr2:128177800-128180600	Weak transcription	A549	lung
9	chr2:128178000-128179000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:128178600-128178800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:128178600-128179600	Genic enhancers	HepG2	liver
12	chr2:128178600-128180200	Genic enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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