Variant report

Variant	rs548648730
Chromosome Location	chr10:25940372-25940373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr10:25940370-25940570	MCF10A-Er-Src	breast:	n/a	n/a
2	EP300	chr10:25940091-25940526	T-47D	breast:	n/a	n/a
3	FOXA1	chr10:25940189-25940678	T-47D	breast:	n/a	n/a
4	FOXA1	chr10:25940298-25940525	T-47D	breast:	n/a	n/a
5	GATA3	chr10:25940094-25940741	T-47D	breast:	n/a	n/a
6	ESR1	chr10:25940018-25940694	T-47D	breast:	n/a	n/a
7	ESR1	chr10:25940102-25940704	T-47D	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:25940372-25940422	A549	lung:	n/a
2	chr10:25940372-25940422	U87	brain:	n/a
3	chr10:25940372-25940422	GM12878	blood:	n/a
4	chr10:25940372-25940422	NT2-D1	testis:	n/a
5	chr10:25940372-25940422	SKMC	muscle:	n/a
6	chr10:25940372-25940422	T-47D	breast:	n/a
7	chr10:25940372-25940422	AG09309	skin:	n/a
8	chr10:25940372-25940422	NHBE	bronchial:	n/a
9	chr10:25940372-25940422	HNPCEpiC	eye:	n/a
10	chr10:25940372-25940422	IMR90	lung:	fetal
11	chr10:25940372-25940422	Hela-S3	cervix:	n/a
12	chr10:25940372-25940422	HMEC	breast:	n/a
13	chr10:25940372-25940422	NHDF-neo	bronchial:	n/a
14	chr10:25940372-25940422	ECC-1	luminal epithelium:	n/a
15	chr10:25940372-25940422	MCF-7	breast:	n/a
16	chr10:25940372-25940422	HCM	heart:	n/a
17	chr10:25940372-25940422	HL-60	blood:	n/a
18	chr10:25940372-25940422	CMK	blood:	n/a
19	chr10:25940372-25940422	HRCEpiC	kidney:	n/a
20	chr10:25940372-25940422	HUVEC	blood vessel:	n/a
21	chr10:25940372-25940422	HCT-116	colon:	n/a
22	chr10:25940372-25940422	SK-N-SH_RA	brain:	n/a
23	chr10:25940372-25940422	LNCaP	prostate:	n/a
24	chr10:25940372-25940422	ovcar-3	ovarian:	n/a
25	chr10:25940372-25940422	HEK293	kidney:	embryo
26	chr10:25940372-25940422	AG04449	skin:	fetal
27	chr10:25940372-25940422	PANC-1	pancreas:	n/a
28	chr10:25940372-25940422	ProgFib	skin:	n/a
29	chr10:25940372-25940422	PFSK-1	brain:	n/a
30	chr10:25940372-25940422	K562	blood:	n/a
31	chr10:25940372-25940422	HRE	kidney:	n/a
32	chr10:25940372-25940422	Jurkat	blood:	n/a
33	chr10:25940372-25940422	PrEC	prostate:	n/a
34	chr10:25940372-25940422	HRPEpiC	eye:	n/a
35	chr10:25940372-25940422	HCPEpiC	choroid plexus:	n/a
36	chr10:25940372-25940422	HAEpiC	amniotic membrane:	n/a
37	chr10:25940372-25940422	HepG2	liver:	n/a
38	chr10:25940372-25940422	GM19239	blood:	n/a
39	chr10:25940372-25940422	HIPEpiC	eye:	n/a
40	chr10:25940372-25940422	Caco-2	colon:	n/a
41	chr10:25940372-25940422	NB4	blood:	n/a
42	chr10:25940372-25940422	HCF	heart:	n/a
43	chr10:25940372-25940422	BJ	skin:	n/a
44	chr10:25940372-25940422	AG04450	lung:	fetal
45	chr10:25940372-25940422	BE2_C	brain:	n/a
46	chr10:25940372-25940422	RPTEC	kidney:	n/a
47	chr10:25940372-25940422	GM12891	blood:	n/a
48	chr10:25940372-25940422	H1-hESC	embryonic stem cell:	embryo
49	chr10:25940372-25940422	AG10803	skin:	n/a
50	chr10:25940372-25940422	AoSMC	blood vessel:	n/a

No data

Variant related genes	Relation type
GPN3P1	TF binding region
GPN3P1	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1044482	chr10:25889919-25977270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3422189	chr10:25940075-25940635	Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25940200-25940800	Enhancers	Cortex derived primary cultured neurospheres	brain

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