Variant report

Variant	rs548728119
Chromosome Location	chr4:122769969-122769970
allele	-/TCTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1971186	chr4:122769965-122769969	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122745400-122777600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:122745400-122790400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:122745400-122790600	Weak transcription	Small Intestine	intestine
4	chr4:122745600-122770000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:122745600-122781600	Weak transcription	Placenta	Placenta
6	chr4:122745600-122790400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:122745600-122790600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:122745600-122790800	Weak transcription	Psoas Muscle	Psoas
9	chr4:122745800-122770200	Weak transcription	GM12878-XiMat	blood
10	chr4:122745800-122772000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:122745800-122779200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:122745800-122781200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:122745800-122786800	Weak transcription	A549	lung
14	chr4:122745800-122790200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:122745800-122790400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:122745800-122790400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:122745800-122790400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:122745800-122790800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr4:122750200-122773600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:122750800-122770600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:122751400-122789800	Weak transcription	NHEK	skin
22	chr4:122751400-122790400	Weak transcription	Primary B cells from cord blood	blood
23	chr4:122751600-122770400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:122751600-122790200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:122752400-122770400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr4:122753400-122770400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:122754000-122778200	Weak transcription	Lung	lung
28	chr4:122754600-122790000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr4:122755400-122790800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:122757600-122790200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr4:122758000-122790000	Weak transcription	HepG2	liver
32	chr4:122760600-122791000	Weak transcription	Spleen	Spleen
33	chr4:122761000-122785000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:122761200-122785000	Weak transcription	K562	blood
35	chr4:122761600-122770600	Strong transcription	Osteobl	bone
36	chr4:122761800-122781400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr4:122762000-122771000	Strong transcription	Fetal Intestine Large	intestine
38	chr4:122762400-122773800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:122762800-122790200	Weak transcription	Brain Substantia Nigra	brain
40	chr4:122763400-122770200	Weak transcription	Fetal Intestine Small	intestine
41	chr4:122763400-122772200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:122763600-122770600	Strong transcription	Adipose Nuclei	Adipose
43	chr4:122763800-122770600	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr4:122763800-122770800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:122764000-122770200	Strong transcription	NHDF-Ad	bronchial
46	chr4:122764000-122770400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:122764000-122770600	Strong transcription	Duodenum Mucosa	Duodenum
48	chr4:122764000-122770800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:122764200-122770800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:122764200-122770800	Strong transcription	Fetal Thymus	thymus

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