Variant report

Variant	rs548785481
Chromosome Location	chr7:101961605-101961606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101958775..101961646-chr7:101962765..101965626,2	K562	blood:
2	chr7:101922927..101925086-chr7:101959740..101962497,2	K562	blood:
3	chr7:101929445..101932504-chr7:101961443..101964470,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758126	chr7:101912320-102005026	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	esv2759548	chr7:101912320-102005026	Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
11	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
12	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
13	esv1822373	chr7:101913187-101969458	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
14	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
15	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	esv3402993	chr7:101960482-101962980	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	esv3375731	chr7:101960857-101963405	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101944000-101975400	Weak transcription	Right Atrium	heart
2	chr7:101950800-101962200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:101950800-101963800	Strong transcription	Brain Germinal Matrix	brain
4	chr7:101951000-101961800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:101951000-101963000	Weak transcription	Fetal Lung	lung
6	chr7:101951000-101964000	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:101951000-101964400	Weak transcription	Brain Substantia Nigra	brain
8	chr7:101951200-101962600	Weak transcription	HSMM	muscle
9	chr7:101951600-101962400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:101952400-101962800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:101952600-101963800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:101954000-101963000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:101955400-101961800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:101955600-101962400	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:101955600-101964000	Strong transcription	Fetal Brain Female	brain
16	chr7:101956800-101961800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:101957400-101963400	Enhancers	Placenta	Placenta
18	chr7:101957600-101961800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:101957600-101962400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:101957600-101962800	Strong transcription	GM12878-XiMat	blood
21	chr7:101958000-101962200	Weak transcription	Ovary	ovary
22	chr7:101958200-101963400	Weak transcription	Aorta	Aorta
23	chr7:101958400-101962200	Enhancers	Adipose Nuclei	Adipose
24	chr7:101959000-101962600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr7:101959600-101968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:101960200-101962200	Weak transcription	HUVEC	blood vessel
27	chr7:101960400-101962200	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:101960600-101961800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
29	chr7:101960600-101961800	Strong transcription	HSMMtube	muscle
30	chr7:101960600-101962400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:101960600-101962800	Enhancers	Primary B cells from cord blood	blood
32	chr7:101960800-101961800	Enhancers	Esophagus	oesophagus
33	chr7:101961000-101962000	Weak transcription	Fetal Intestine Small	intestine
34	chr7:101961000-101962200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr7:101961200-101961800	Bivalent Enhancer	Right Ventricle	heart
36	chr7:101961200-101962000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr7:101961200-101962600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
38	chr7:101961200-101963200	Enhancers	Fetal Muscle Trunk	muscle
39	chr7:101961200-101963200	Genic enhancers	Fetal Muscle Leg	muscle
40	chr7:101961400-101961800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
41	chr7:101961400-101961800	Enhancers	Fetal Heart	heart
42	chr7:101961400-101962400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
43	chr7:101961400-101962400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:101961400-101962400	Enhancers	Primary hematopoietic stem cells	blood
45	chr7:101961400-101962400	Enhancers	Pancreas	Pancrea
46	chr7:101961400-101962400	Active TSS	Hela-S3	cervix
47	chr7:101961400-101962800	Enhancers	Lung	lung
48	chr7:101961400-101963600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
49	chr7:101961600-101961800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:101961600-101961800	Active TSS	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links