Variant report

Variant	rs549047645
Chromosome Location	chr15:76165999-76166000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76135341..76137151-chr15:76165661..76168140,3	MCF-7	breast:
2	chr15:76160135..76162461-chr15:76165761..76167464,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv984093	chr15:76164797-76168564	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76137200-76166200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:76137800-76166000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
4	chr15:76138000-76179600	Weak transcription	Small Intestine	intestine
5	chr15:76138200-76166000	Weak transcription	Aorta	Aorta
6	chr15:76138200-76166000	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:76138200-76166000	Weak transcription	Pancreas	Pancrea
8	chr15:76138200-76166000	Weak transcription	Spleen	Spleen
9	chr15:76138200-76183000	Weak transcription	Hela-S3	cervix
10	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:76138400-76184000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:76138800-76166000	Weak transcription	Esophagus	oesophagus
14	chr15:76138800-76169200	Weak transcription	Psoas Muscle	Psoas
15	chr15:76140000-76184000	Weak transcription	Fetal Kidney	kidney
16	chr15:76140400-76166000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:76141600-76166000	Weak transcription	NHLF	lung
19	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr15:76146200-76166000	Weak transcription	Right Ventricle	heart
21	chr15:76146400-76166000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:76146400-76166000	Weak transcription	Lung	lung
23	chr15:76148400-76166000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
25	chr15:76149400-76166000	Weak transcription	Fetal Intestine Small	intestine
26	chr15:76151800-76166000	Weak transcription	HUVEC	blood vessel
27	chr15:76152800-76193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr15:76153400-76168800	Weak transcription	Brain Substantia Nigra	brain
29	chr15:76154400-76166000	Weak transcription	NHDF-Ad	bronchial
30	chr15:76155600-76166000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:76155800-76166400	Weak transcription	HepG2	liver
32	chr15:76158200-76166000	Weak transcription	Primary T cells from cord blood	blood
33	chr15:76159400-76166200	Weak transcription	A549	lung
34	chr15:76159600-76166000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:76159800-76166000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr15:76159800-76195400	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:76160800-76176000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:76161000-76182200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:76161200-76172600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:76161800-76166000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:76161800-76182000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:76162000-76166000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:76162000-76176600	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr15:76162000-76184000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr15:76162200-76166000	Weak transcription	Primary B cells from cord blood	blood
46	chr15:76162200-76166000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:76162600-76166000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:76162600-76166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:76162600-76166000	Weak transcription	Brain Germinal Matrix	brain
50	chr15:76162600-76166000	Weak transcription	Gastric	stomach

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