Variant report

Variant	rs549361565
Chromosome Location	chr1:194022091-194022092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv275445	chr1:194021985-194026943	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194020400-194030800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr1:194020800-194030800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr1:194021000-194022400	Enhancers	Thymus	Thymus
4	chr1:194021000-194023600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr1:194021200-194022400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr1:194021200-194022400	Enhancers	Fetal Thymus	thymus
7	chr1:194021200-194024800	Weak transcription	Small Intestine	intestine
8	chr1:194021200-194027600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:194021400-194022200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr1:194021400-194022400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:194021400-194022400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:194021400-194022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:194021400-194022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:194021600-194022200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:194021600-194022400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr1:194021800-194022200	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr1:194021800-194022400	Enhancers	Primary hematopoietic stem cells	blood
18	chr1:194022000-194022200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:194022000-194022200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr1:194022000-194022200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr1:194022000-194022200	Enhancers	Fetal Lung	lung
22	chr1:194022000-194022400	Enhancers	Pancreas	Pancrea
23	chr1:194022000-194022400	Enhancers	Stomach Mucosa	stomach

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