Variant report

Variant	rs549442632
Chromosome Location	chr6:151029090-151029091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:151029067..151031162-chr6:151034859..151036741,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3439835	chr6:151027582-151036981	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151015200-151033200	Weak transcription	Right Atrium	heart
2	chr6:151017600-151029200	Weak transcription	Lung	lung
3	chr6:151019000-151033000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:151019000-151033200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:151019000-151035200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:151021600-151033000	Weak transcription	Fetal Stomach	stomach
7	chr6:151021600-151040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:151024200-151034200	Weak transcription	Right Ventricle	heart
9	chr6:151024400-151032800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:151025600-151033200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:151025800-151031400	Weak transcription	Esophagus	oesophagus
12	chr6:151026000-151030800	Weak transcription	Stomach Mucosa	stomach
13	chr6:151026000-151033600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:151026200-151031200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:151026400-151031000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:151026800-151033200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:151026800-151043600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:151027000-151033200	Weak transcription	Fetal Intestine Small	intestine
19	chr6:151027200-151033000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:151027400-151033200	Weak transcription	Fetal Kidney	kidney
21	chr6:151028400-151029400	Enhancers	Fetal Thymus	thymus
22	chr6:151028400-151029800	Genic enhancers	Primary B cells from cord blood	blood
23	chr6:151028600-151029200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:151028600-151029200	Enhancers	Fetal Lung	lung
25	chr6:151028600-151029200	Strong transcription	Thymus	Thymus
26	chr6:151028600-151029400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr6:151028600-151029400	Enhancers	Placenta	Placenta
28	chr6:151028600-151029400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr6:151028600-151029400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:151028600-151029600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:151028600-151029600	Genic enhancers	Spleen	Spleen
32	chr6:151028600-151029800	Enhancers	Adipose Nuclei	Adipose
33	chr6:151028800-151029600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr6:151029000-151029400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr6:151029000-151029400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:151029000-151029400	Enhancers	Fetal Muscle Leg	muscle
37	chr6:151029000-151029600	Enhancers	Brain Anterior Caudate	brain
38	chr6:151029000-151029600	Enhancers	Left Ventricle	heart
39	chr6:151029000-151029600	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr6:151029000-151030000	Genic enhancers	Primary B cells from peripheral blood	blood
41	chr6:151029000-151033000	Weak transcription	Small Intestine	intestine

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