Variant report

Variant	rs549552771
Chromosome Location	chr15:52901567-52901568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:52901471-52901829	K562	blood:	n/a	n/a
2	CEBPB	chr15:52901512-52901992	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:52901526..52903725-chr15:52969429..52971741,2	MCF-7	breast:
2	chr15:52894420..52896293-chr15:52901016..52903644,2	MCF-7	breast:
3	chr15:52878282..52881403-chr15:52901150..52903681,3	K562	blood:

Variant related genes	Relation type
FAM214A	TF binding region
ENSG00000047346	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1832020	chr15:52702400-52901914	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047775	chr15:52822050-52912228	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv833006	chr15:52825954-53040462	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv457140	chr15:52901433-52968746	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52861200-52925200	Weak transcription	Stomach Mucosa	stomach
2	chr15:52861600-52901600	Weak transcription	Esophagus	oesophagus
3	chr15:52861800-52901600	Weak transcription	A549	lung
4	chr15:52861800-52908400	Weak transcription	Gastric	stomach
5	chr15:52861800-52934800	Weak transcription	Right Ventricle	heart
6	chr15:52862000-52901600	Weak transcription	Brain Angular Gyrus	brain
7	chr15:52869400-52945400	Weak transcription	Small Intestine	intestine
8	chr15:52870200-52905000	Weak transcription	HMEC	breast
9	chr15:52871200-52901600	Weak transcription	Dnd41	blood
10	chr15:52871800-52902200	Weak transcription	Fetal Brain Male	brain
11	chr15:52871800-52967600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:52872200-52933800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:52872600-52920800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:52873400-52928000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:52873800-52909600	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr15:52874200-52917000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:52874800-52944200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:52875400-52916200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:52878200-52909600	Strong transcription	Liver	Liver
20	chr15:52881400-52901600	Weak transcription	Psoas Muscle	Psoas
21	chr15:52882200-52920000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr15:52882400-52906200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr15:52882400-52926000	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr15:52884200-52901600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:52884600-52901600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:52885600-52902000	Weak transcription	NHLF	lung
27	chr15:52885600-52903800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:52885600-52945200	Weak transcription	Spleen	Spleen
29	chr15:52886000-52901600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:52890600-52901600	Weak transcription	Pancreas	Pancrea
31	chr15:52890600-52906000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:52891200-52902000	Weak transcription	Lung	lung
33	chr15:52891200-52903800	Weak transcription	Fetal Intestine Small	intestine
34	chr15:52891400-52901600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:52891400-52927600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:52891600-52908400	Weak transcription	Aorta	Aorta
37	chr15:52893800-52901600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:52894600-52904400	Strong transcription	Primary T cells from cord blood	blood
39	chr15:52894600-52906000	Strong transcription	Fetal Intestine Large	intestine
40	chr15:52895400-52901600	Weak transcription	HepG2	liver
41	chr15:52895400-52902200	Weak transcription	Fetal Heart	heart
42	chr15:52896800-52901600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:52896800-52904200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr15:52896800-52904200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:52897000-52901600	Weak transcription	Colonic Mucosa	Colon
46	chr15:52897000-52901600	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:52897000-52901600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:52897000-52902200	Weak transcription	Fetal Kidney	kidney
49	chr15:52897000-52904400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:52897200-52902800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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