Variant report

Variant	rs549639721
Chromosome Location	chr15:76121601-76121602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76120011..76122209-chr15:76134014..76135562,2	MCF-7	breast:
2	chr15:76113812..76116498-chr15:76121145..76123041,2	MCF-7	breast:
3	chr15:76119288..76121782-chr15:76196929..76199801,2	MCF-7	breast:
4	chr15:76119075..76126394-chr15:76131883..76137214,12	MCF-7	breast:
5	chr15:76107299..76109234-chr15:76120119..76122431,2	MCF-7	breast:
6	chr15:76118274..76121230-chr15:76121538..76124527,4	K562	blood:
7	chr15:76119912..76121861-chr15:76135027..76136705,2	K562	blood:
8	chr15:76119180..76121817-chr15:76184055..76185596,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76116800-76123200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76116800-76123400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr15:76117000-76122800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:76117000-76123200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:76117000-76123800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:76117200-76123000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:76119600-76123400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:76120000-76123200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:76120200-76123400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:76120200-76123400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:76120400-76123000	Weak transcription	HSMMtube	muscle
12	chr15:76120400-76123200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:76120400-76123200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:76120400-76123200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:76120400-76123400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:76120400-76123600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:76120600-76123200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:76120800-76124200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:76121200-76128000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:76121400-76123600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:76121400-76124000	Weak transcription	HMEC	breast
22	chr15:76121400-76124400	Weak transcription	NHEK	skin
23	chr15:76121600-76122800	Weak transcription	K562	blood

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