Variant report

Variant	rs549734224
Chromosome Location	chr1:119282403-119282404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3494191	chr1:118772550-119719548	Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3494192	chr1:118772550-119719548	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv997707	chr1:119199568-119595949	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2750799	chr1:119229257-119382227	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv872170	chr1:119281083-119300747	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119280800-119282800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr1:119281000-119282600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:119281200-119283000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:119281200-119283000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr1:119281400-119283000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:119281400-119283000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:119281800-119282600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr1:119281800-119282600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:119281800-119282800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:119281800-119282800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:119282000-119282600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:119282000-119282600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:119282000-119282600	Enhancers	Psoas Muscle	Psoas
14	chr1:119282000-119282600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr1:119282200-119282600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:119282200-119282600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:119282400-119287200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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