Variant report

Variant	rs549740912
Chromosome Location	chr10:52793587-52793588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52756800-52794800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:52788000-52793600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:52790600-52794600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:52791800-52795400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:52792200-52794800	Weak transcription	Aorta	Aorta
6	chr10:52792400-52793600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:52792400-52796400	Weak transcription	Fetal Stomach	stomach
8	chr10:52792600-52796400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:52792800-52795200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:52792800-52795800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:52793000-52794200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr10:52793000-52795400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr10:52793000-52795600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:52793000-52796200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:52793200-52794200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr10:52793400-52793600	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:52793400-52793600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:52793400-52794600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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