Variant report

Variant	rs549797109
Chromosome Location	chr14:35401346-35401347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35347443..35349212-chr14:35398653..35401635,2	MCF-7	breast:
2	chr14:35342311..35345634-chr14:35398849..35401832,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198604	Chromatin interaction
ENSG00000258738	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv901603	chr14:35371697-35435651	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
10	nsv901604	chr14:35381137-35485748	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
11	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
12	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
13	esv1802718	chr14:35400075-35429777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv2643760	chr14:35400793-35402165	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3335175	chr14:35401301-35401829	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv3528229	chr14:35401321-35401837	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv3528185	chr14:35401328-35401819	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv1998467	chr14:35401332-35401913	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv3502678	chr14:35401333-35401838	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv3528207	chr14:35401339-35401794	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv3528196	chr14:35401347-35401748	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35381400-35412200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:35389600-35411400	Weak transcription	Aorta	Aorta
3	chr14:35390000-35412600	Weak transcription	Ovary	ovary
4	chr14:35393000-35404400	Weak transcription	Left Ventricle	heart
5	chr14:35394600-35424000	Weak transcription	Fetal Lung	lung
6	chr14:35396400-35425200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:35396600-35424800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:35397200-35412800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:35397800-35420600	Weak transcription	Thymus	Thymus
10	chr14:35398000-35408200	Weak transcription	Liver	Liver
11	chr14:35398800-35410600	Weak transcription	Fetal Brain Male	brain
12	chr14:35399000-35412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:35399400-35402200	Weak transcription	HepG2	liver
14	chr14:35399400-35406800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:35399600-35412200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:35399800-35401400	Enhancers	Stomach Mucosa	stomach
17	chr14:35399800-35404400	Weak transcription	Fetal Intestine Small	intestine
18	chr14:35400200-35401400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr14:35400400-35401400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr14:35400600-35427000	Weak transcription	Primary B cells from cord blood	blood
21	chr14:35400800-35401400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr14:35400800-35401400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:35400800-35402400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:35400800-35402800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr14:35400800-35404400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr14:35400800-35404400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr14:35400800-35412200	Weak transcription	Adipose Nuclei	Adipose
28	chr14:35401000-35402200	Weak transcription	NHDF-Ad	bronchial
29	chr14:35401000-35402400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:35401000-35404400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:35401000-35411200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:35401000-35421400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:35401000-35428800	Weak transcription	GM12878-XiMat	blood
34	chr14:35401000-35440400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:35401200-35402200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr14:35401200-35404800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr14:35401200-35408800	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links