Variant report

Variant	rs549938372
Chromosome Location	chr12:86696022-86696023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1053087	chr12:86569126-86733418	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541564	chr12:86569126-86733418	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1045386	chr12:86616015-86733418	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv541565	chr12:86616015-86733418	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv1843214	chr12:86673989-86703959	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv1850061	chr12:86673989-86703959	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv802	chr12:86683758-86723684	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv983491	chr12:86694812-86703018	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv2529439	chr12:86695010-86703868	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv2471686	chr12:86695246-86703977	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv819565	chr12:86695439-86703271	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv2131445	chr12:86695532-86703230	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3490474	chr12:86695557-86703172	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3490452	chr12:86695594-86703143	Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3490463	chr12:86695609-86703142	Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv3490496	chr12:86695621-86703419	Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv3490485	chr12:86695628-86703098	Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv826467	chr12:86695659-86703171	Weak transcription	n/a	n/a	inside rSNPs	diseases
24	nsv514678	chr12:86695677-86703029	Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv498801	chr12:86695694-86703067	Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv3490508	chr12:86695695-86703067	Weak transcription	n/a	n/a	inside rSNPs	diseases
27	esv10267	chr12:86695700-86703035	Weak transcription	n/a	n/a	inside rSNPs	diseases
28	esv2421908	chr12:86695712-86701257	Weak transcription	n/a	n/a	inside rSNPs	diseases
29	nsv559684	chr12:86695712-86702395	Weak transcription	n/a	n/a	inside rSNPs	diseases
30	esv1843781	chr12:86695712-86702906	Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv1851865	chr12:86695712-86702906	Weak transcription	n/a	n/a	inside rSNPs	diseases
32	nsv559685	chr12:86695712-86702906	Weak transcription	n/a	n/a	inside rSNPs	diseases
33	esv1845118	chr12:86695712-86703959	Weak transcription	n/a	n/a	inside rSNPs	diseases
34	esv1845447	chr12:86695712-86703959	Weak transcription	n/a	n/a	inside rSNPs	diseases
35	esv1847280	chr12:86695712-86703959	Weak transcription	n/a	n/a	inside rSNPs	diseases
36	esv1850693	chr12:86695712-86703959	Weak transcription	n/a	n/a	inside rSNPs	diseases
37	nsv826468	chr12:86695754-86703171	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86690600-86698200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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