Variant report

Variant	rs550070063
Chromosome Location	chr4:102160784-102160785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:102160218..102162445-chr4:102172833..102174744,2	MCF-7	breast:
2	chr4:102160185..102162407-chr4:102162832..102166466,3	MCF-7	breast:
3	chr4:102149127..102151835-chr4:102160270..102161845,2	MCF-7	breast:
4	chr4:102160648..102162431-chr4:102260568..102262904,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	esv3432634	chr4:102160750-102161318	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102146400-102162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:102152800-102165600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:102153000-102165600	Weak transcription	Brain Anterior Caudate	brain
4	chr4:102153000-102165600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:102157400-102165400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:102157800-102179600	Weak transcription	Primary B cells from cord blood	blood
7	chr4:102158400-102161000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr4:102159000-102160800	Enhancers	Adipose Nuclei	Adipose
9	chr4:102159000-102161000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr4:102159000-102161000	Enhancers	NHLF	lung
11	chr4:102159000-102161200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:102159200-102162000	Weak transcription	Ovary	ovary
13	chr4:102159200-102162200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:102159200-102163000	Weak transcription	Stomach Mucosa	stomach
15	chr4:102159200-102164000	Weak transcription	Gastric	stomach
16	chr4:102159200-102164000	Weak transcription	Pancreas	Pancrea
17	chr4:102159200-102164000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:102159200-102165600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:102159200-102165600	Weak transcription	Brain Angular Gyrus	brain
20	chr4:102159200-102165600	Weak transcription	Esophagus	oesophagus
21	chr4:102159200-102179800	Weak transcription	Psoas Muscle	Psoas
22	chr4:102159400-102161000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:102159600-102161000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr4:102159600-102161000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:102159600-102161000	Enhancers	Hela-S3	cervix
26	chr4:102159600-102161200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:102159600-102161200	Enhancers	NHDF-Ad	bronchial
28	chr4:102159600-102161200	Enhancers	Osteobl	bone
29	chr4:102159600-102161400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:102159800-102160800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr4:102159800-102160800	Enhancers	Fetal Kidney	kidney
32	chr4:102159800-102161000	Enhancers	Colon Smooth Muscle	Colon
33	chr4:102159800-102161000	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr4:102159800-102161200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:102159800-102161400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr4:102160000-102160800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr4:102160000-102161000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr4:102160200-102160800	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr4:102160200-102160800	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr4:102160200-102161000	Enhancers	Brain Hippocampus Middle	brain
41	chr4:102160200-102161000	Enhancers	HSMM	muscle
42	chr4:102160400-102161000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:102160400-102161000	Enhancers	HSMMtube	muscle
44	chr4:102160400-102161400	Enhancers	A549	lung
45	chr4:102160400-102161400	Enhancers	NHEK	skin
46	chr4:102160400-102163200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr4:102160400-102164000	Weak transcription	HMEC	breast
48	chr4:102160400-102165600	Weak transcription	Small Intestine	intestine
49	chr4:102160600-102161000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:102160600-102161000	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links