Variant report

Variant	rs550113815
Chromosome Location	chr10:50676665-50676666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv1051636	chr10:50675292-50732280	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50662200-50677800	Weak transcription	Fetal Heart	heart
2	chr10:50662200-50691600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:50662400-50690000	Weak transcription	Stomach Mucosa	stomach
4	chr10:50662400-50693200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:50662600-50677600	Weak transcription	NHDF-Ad	bronchial
6	chr10:50662600-50691400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:50663200-50693800	Weak transcription	HepG2	liver
8	chr10:50664000-50677400	Weak transcription	Fetal Kidney	kidney
9	chr10:50664600-50678200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:50666600-50684400	Weak transcription	NHLF	lung
11	chr10:50666800-50678200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:50667800-50677600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:50667800-50707400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:50668000-50713400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:50668200-50680200	Weak transcription	GM12878-XiMat	blood
16	chr10:50668400-50677600	Weak transcription	NH-A	brain
17	chr10:50668400-50677800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:50668400-50677800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:50668400-50678200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:50668800-50677600	Weak transcription	Psoas Muscle	Psoas
21	chr10:50668800-50677800	Weak transcription	Fetal Thymus	thymus
22	chr10:50669000-50678200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:50669600-50677800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:50670600-50691600	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr10:50671600-50686600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:50671800-50679400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:50671800-50693800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:50672000-50679600	Weak transcription	Dnd41	blood
29	chr10:50672000-50687200	Strong transcription	Fetal Muscle Leg	muscle
30	chr10:50672000-50691800	Strong transcription	Primary T cells from cord blood	blood
31	chr10:50672200-50679400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:50672200-50691800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:50672400-50691600	Strong transcription	Ovary	ovary
34	chr10:50672600-50686800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr10:50672600-50691800	Strong transcription	Adipose Nuclei	Adipose
36	chr10:50672800-50677400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:50672800-50678200	Weak transcription	Thymus	Thymus
38	chr10:50672800-50691600	Strong transcription	HUVEC	blood vessel
39	chr10:50672800-50691800	Strong transcription	Primary B cells from peripheral blood	blood
40	chr10:50673000-50676800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr10:50673000-50679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:50673000-50690000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:50673200-50679400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:50673200-50683800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:50673200-50687600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:50673200-50688000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:50673200-50691800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:50673400-50691600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:50673600-50691600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:50673600-50692800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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