Variant report

Variant	rs550143468
Chromosome Location	chr14:32545951-32545952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr14:32544935-32546115	A549	lung:	n/a	n/a
2	POLR2A	chr14:32544959-32546167	PBDE	blood:	n/a	n/a
3	POLR2A	chr14:32545290-32546536	HUVEC	blood vessel:	n/a	n/a
4	NFYB	chr14:32545665-32546038	GM12878	blood:	n/a	chr14:32545927-32545942
5	NFIC	chr14:32544829-32546369	HepG2	liver:	n/a	n/a
6	TAF7	chr14:32545211-32546416	H1-hESC	embryonic stem cell:	n/a	n/a
7	MYC	chr14:32545877-32545981	HUVEC	blood vessel:	n/a	n/a
8	POLR2A	chr14:32545351-32547512	Raji	blood:	n/a	n/a
9	NRF1	chr14:32544681-32546383	SK-N-SH	brain:	n/a	chr14:32546163-32546174 chr14:32546191-32546202 chr14:32546004-32546013
10	POLR2A	chr14:32545459-32546632	HUVEC	blood vessel:	n/a	n/a
11	YY1	chr14:32545328-32546528	ECC-1	luminal epithelium:	n/a	chr14:32545492-32545506 chr14:32546313-32546323 chr14:32546232-32546246
12	HMGN3	chr14:32545867-32547116	K562	blood:	n/a	n/a
13	ELK1	chr14:32545541-32546037	GM12878	blood:	n/a	n/a
14	YY1	chr14:32545270-32546932	SK-N-SH	brain:	n/a	chr14:32546540-32546554 chr14:32546810-32546824 chr14:32546546-32546555 chr14:32546768-32546779 chr14:32546807-32546821 chr14:32545492-32545506 chr14:32546764-32546775 chr14:32546313-32546323 chr14:32546543-32546552 chr14:32546546-32546560 chr14:32546764-32546773 chr14:32546544-32546555 chr14:32546232-32546246 chr14:32546543-32546557
15	POLR2A	chr14:32545141-32547177	H1-neurons	neurons:	n/a	n/a
16	POLR2A	chr14:32545185-32546607	GM12878	blood:	n/a	n/a
17	MYC	chr14:32545129-32546385	K562	blood:	n/a	chr14:32546018-32546028
18	POLR2A	chr14:32545261-32546788	HCT-116	colon:	n/a	n/a
19	GTF2F1	chr14:32545650-32546308	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr14:32545159-32547496	GM19193	blood:	n/a	n/a
21	ZBTB33	chr14:32545581-32545952	A549	lung:	n/a	n/a
22	YY1	chr14:32545314-32546034	ECC-1	luminal epithelium:	n/a	chr14:32545492-32545506
23	REST	chr14:32545438-32546080	H1-neurons	neurons:	n/a	n/a
24	POLR2A	chr14:32545240-32547079	K562	blood:	n/a	n/a
25	ELK1	chr14:32545206-32546369	Hela-S3	cervix:	n/a	n/a
26	E2F6	chr14:32545302-32547094	K562	blood:	n/a	chr14:32546544-32546554 chr14:32546966-32546975 chr14:32546940-32546950 chr14:32545951-32545962 chr14:32546547-32546557
27	TBL1XR1	chr14:32545714-32546097	GM12878	blood:	n/a	n/a
28	FOXP2	chr14:32545919-32546380	PFSK-1	brain:	n/a	n/a
29	CTBP2	chr14:32545260-32546164	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr14:32545423-32547516	HepG2	liver:	n/a	n/a
31	POLR2A	chr14:32545316-32546858	ProgFib	skin:	n/a	n/a
32	ZNF384	chr14:32545660-32546167	K562	blood:	n/a	n/a
33	TBP	chr14:32545328-32546730	K562	blood:	n/a	n/a
34	ELF1	chr14:32545599-32546270	GM12878	blood:	n/a	n/a
35	POLR2A	chr14:32545330-32546922	MCF-7	breast:	n/a	n/a
36	POLR2A	chr14:32545255-32546843	A549	lung:	n/a	n/a
37	TAF1	chr14:32545232-32546145	SK-N-SH	brain:	n/a	n/a
38	NFYB	chr14:32545613-32546069	Hela-S3	cervix:	n/a	chr14:32545927-32545942
39	BACH1	chr14:32544987-32546243	H1-hESC	embryonic stem cell:	n/a	n/a
40	CHD2	chr14:32545516-32546185	H1-hESC	embryonic stem cell:	n/a	n/a
41	MAX	chr14:32545274-32546489	ECC-1	luminal epithelium:	n/a	chr14:32546018-32546028 chr14:32546461-32546471
42	MAX	chr14:32545041-32546687	SK-N-SH	brain:	n/a	chr14:32546018-32546028 chr14:32546461-32546471
43	GATA3	chr14:32545390-32546408	T-47D	breast:	n/a	n/a
44	POLR2A	chr14:32545352-32547117	HEK293	kidney:	n/a	n/a
45	UBTF	chr14:32545245-32547688	K562	blood:	n/a	n/a
46	HA-E2F1	chr14:32545130-32546701	MCF-7	breast:	n/a	chr14:32546544-32546554 chr14:32546547-32546557 chr14:32546038-32546049
47	POLR2A	chr14:32544903-32547703	Hela-S3	cervix:	n/a	n/a
48	CREB1	chr14:32545611-32545994	A549	lung:	n/a	n/a
49	POLR2A	chr14:32545271-32547661	HepG2	liver:	n/a	n/a
50	ETS1	chr14:32545253-32545961	A549	lung:	n/a	chr14:32545452-32545465

No.	Distal block	Cell Line	Cell type
1	chr14:32544948..32548496-chr14:32669195..32673537,9	MCF-7	breast:
2	chr14:32544618..32548147-chr14:32668083..32673759,9	K562	blood:
3	chr14:32544500..32547770-chr14:32669959..32673759,8	K562	blood:
4	chr14:32545768..32548128-chr14:32672317..32675290,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf126-4	chr14:32544625-32545999	ENSG00000258655.1
2	lnc-C14orf126-4	chr14:32545356-32546002	NONHSAT036299

Variant related genes	Relation type
ARHGAP5	TF binding region
ENSG00000201654	Chromatin interaction
ENSG00000202337	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv3359965	chr14:32545226-32548074	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32543400-32546600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:32543400-32549200	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr14:32543600-32549000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:32543600-32550600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:32543800-32549800	Active TSS	HMEC	breast
6	chr14:32544000-32546600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:32544000-32548000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:32544000-32548600	Active TSS	A549	lung
9	chr14:32544000-32549200	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr14:32544200-32546000	Active TSS	Right Atrium	heart
11	chr14:32544200-32547600	Active TSS	Brain Anterior Caudate	brain
12	chr14:32544200-32547800	Active TSS	Brain Hippocampus Middle	brain
13	chr14:32544200-32548200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:32544200-32548400	Active TSS	Left Ventricle	heart
15	chr14:32544200-32548600	Active TSS	Ovary	ovary
16	chr14:32544200-32548600	Active TSS	Right Ventricle	heart
17	chr14:32544200-32548800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr14:32544200-32548800	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr14:32544200-32549000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:32544200-32549200	Active TSS	Psoas Muscle	Psoas
21	chr14:32544200-32550000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:32544400-32546000	Active TSS	Fetal Heart	heart
23	chr14:32544400-32547800	Active TSS	Brain Substantia Nigra	brain
24	chr14:32544400-32548200	Active TSS	H9 Cell Line	embryonic stem cell
25	chr14:32544400-32548400	Active TSS	Colonic Mucosa	Colon
26	chr14:32544400-32548600	Active TSS	H1 Cell Line	embryonic stem cell
27	chr14:32544400-32549000	Active TSS	Aorta	Aorta
28	chr14:32544400-32549200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:32544400-32549200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:32544600-32546600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:32544600-32546800	Active TSS	Fetal Brain Female	brain
32	chr14:32544600-32547600	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr14:32544600-32547800	Active TSS	Rectal Mucosa Donor 31	rectum
34	chr14:32544600-32547800	Active TSS	Hela-S3	cervix
35	chr14:32544600-32548000	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr14:32544600-32548200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:32544600-32548200	Active TSS	Colon Smooth Muscle	Colon
38	chr14:32544600-32548200	Active TSS	NHDF-Ad	bronchial
39	chr14:32544600-32548400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:32544600-32548400	Active TSS	Muscle Satellite Cultured Cells	--
41	chr14:32544600-32548400	Active TSS	Fetal Intestine Small	intestine
42	chr14:32544600-32548600	Active TSS	NHEK	skin
43	chr14:32544600-32548800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:32544600-32548800	Active TSS	Brain Angular Gyrus	brain
45	chr14:32544600-32548800	Active TSS	NHLF	lung
46	chr14:32544600-32549000	Active TSS	Stomach Smooth Muscle	stomach
47	chr14:32544800-32547800	Active TSS	Placenta Amnion	Placenta Amnion
48	chr14:32544800-32548000	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr14:32544800-32548000	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr14:32544800-32548000	Active TSS	Esophagus	oesophagus

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