Variant report

Variant	rs550168886
Chromosome Location	chr2:210551221-210551222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210536600-210552200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:210540200-210552200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:210541800-210551600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:210541800-210596400	Weak transcription	Gastric	stomach
7	chr2:210542000-210555400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:210543600-210552200	Weak transcription	Pancreas	Pancrea
9	chr2:210544000-210596600	Weak transcription	Ovary	ovary
10	chr2:210544200-210555200	Weak transcription	Left Ventricle	heart
11	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:210546200-210552400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:210546400-210551800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:210546400-210552000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr2:210546400-210554800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:210546800-210560000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:210547600-210552200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:210547800-210551600	Weak transcription	Brain Germinal Matrix	brain
19	chr2:210547800-210552200	Weak transcription	Aorta	Aorta
20	chr2:210549200-210559600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:210549600-210551800	Weak transcription	Fetal Brain Female	brain
22	chr2:210550200-210551400	Enhancers	Fetal Heart	heart
23	chr2:210550400-210551400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:210550400-210552800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:210550600-210551600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:210550800-210551400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr2:210550800-210552200	Weak transcription	Fetal Brain Male	brain
28	chr2:210550800-210552800	Enhancers	NHDF-Ad	bronchial
29	chr2:210550800-210557400	Weak transcription	Brain Anterior Caudate	brain
30	chr2:210550800-210557400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr2:210551000-210551800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:210551000-210552200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr2:210551000-210552600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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