Variant report

Variant	rs550381123
Chromosome Location	chr4:86462427-86462428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2425088	chr4:86461907-86463490	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2234618	chr4:86462127-86462808	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3506402	chr4:86462174-86462713	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3465601	chr4:86462176-86462713	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3506399	chr4:86462192-86462700	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3506398	chr4:86462212-86462642	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3465599	chr4:86462219-86462679	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3465596	chr4:86462228-86462636	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3465598	chr4:86462232-86462633	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3506400	chr4:86462236-86462665	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3465600	chr4:86462270-86462611	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3506401	chr4:86462278-86462627	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv2509163	chr4:86462285-86462605	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3465602	chr4:86462285-86462620	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3506403	chr4:86462285-86462620	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86430200-86468600	Weak transcription	Pancreas	Pancrea
2	chr4:86445400-86464600	Weak transcription	HSMM	muscle
3	chr4:86452200-86465000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:86454000-86476600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:86454600-86471800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:86454800-86471800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:86456000-86464200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:86457800-86470400	Weak transcription	Primary B cells from cord blood	blood
9	chr4:86458200-86466600	Weak transcription	Right Atrium	heart
10	chr4:86458800-86463800	Weak transcription	Fetal Heart	heart
11	chr4:86461000-86476600	Weak transcription	Left Ventricle	heart
12	chr4:86462400-86464400	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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