Variant report

Variant	rs550586235
Chromosome Location	chr2:128196571-128196572
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv519035	chr2:128195244-128210400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv524607	chr2:128196424-128218364	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128181400-128209800	Weak transcription	Right Atrium	heart
2	chr2:128181600-128197200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:128183000-128197000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:128194000-128196800	Enhancers	Liver	Liver
5	chr2:128194600-128197200	Enhancers	Gastric	stomach
6	chr2:128195200-128197000	Enhancers	Stomach Mucosa	stomach
7	chr2:128195200-128197400	Enhancers	Pancreas	Pancrea
8	chr2:128195400-128196600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr2:128195400-128196600	Flanking Active TSS	HepG2	liver
10	chr2:128195600-128196600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr2:128195800-128197400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:128196000-128197000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:128196200-128196800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:128196200-128196800	Weak transcription	Lung	lung
15	chr2:128196200-128211600	Weak transcription	Colonic Mucosa	Colon
16	chr2:128196400-128196600	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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