Variant report

Variant	rs550649750
Chromosome Location	chr6:55623083-55623084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55622493..55624357-chr6:55728827..55731064,2	MCF-7	breast:
2	chr6:55497542..55498111-chr6:55623067..55623980,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885908	chr6:55539010-55625041	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv885909	chr6:55539010-55674338	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1019228	chr6:55608688-55653498	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv966694	chr6:55622917-55625119	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55616200-55627800	Weak transcription	Fetal Brain Male	brain
2	chr6:55618200-55672400	Weak transcription	Placenta	Placenta
3	chr6:55619600-55624600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:55619800-55626000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:55620200-55623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:55620200-55623800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:55621400-55624600	Enhancers	Hela-S3	cervix
8	chr6:55621800-55625000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:55621800-55626800	Strong transcription	Fetal Lung	lung
10	chr6:55622000-55624000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:55622800-55623200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:55622800-55624000	Enhancers	NHEK	skin
13	chr6:55622800-55624400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:55622800-55624600	Enhancers	HMEC	breast
15	chr6:55623000-55623200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:55623000-55623200	ZNF genes & repeats	Fetal Heart	heart
17	chr6:55623000-55623200	Flanking Active TSS	NHDF-Ad	bronchial
18	chr6:55623000-55623800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:55623000-55624000	Enhancers	Osteobl	bone
20	chr6:55623000-55624600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:55623000-55624600	Enhancers	Muscle Satellite Cultured Cells	--

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