Variant report

Variant	rs550778065
Chromosome Location	chr13:64388088-64388089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:64388025-64388238	MCF-7	breast:	n/a	n/a
2	MYC	chr13:64387999-64388196	MCF-7	breast:	n/a	n/a
3	POLR2A	chr13:64388052-64388196	A549	lung:	n/a	n/a
4	MYC	chr13:64388059-64388131	MCF-7	breast:	n/a	n/a
5	CTCF	chr13:64388066-64388097	MCF-7	breast:	n/a	n/a
6	POLR2A	chr13:64387940-64388242	MCF-7	breast:	n/a	n/a
7	MYC	chr13:64388017-64388123	MCF-7	breast:	n/a	n/a
8	CTCF	chr13:64388087-64388090	MCF-7	breast:	n/a	n/a
9	POLR2A	chr13:64388046-64388224	Gliobla	brain:	n/a	n/a
10	MYC	chr13:64387981-64388168	MCF-7	breast:	n/a	n/a
11	CTCF	chr13:64388076-64388141	Fibrobl	skin:	n/a	n/a

Variant related genes	Relation type
PPP1R2P10	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1050067	chr13:64173948-64405310	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2756457	chr13:64244499-64497199	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2761233	chr13:64254856-64405322	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2752418	chr13:64279132-64392221	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv900317	chr13:64287383-64404330	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv900318	chr13:64287383-64411616	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv870276	chr13:64287557-64424570	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1052299	chr13:64288122-64405310	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1047233	chr13:64289304-64394120	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv900320	chr13:64290980-64392087	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv900321	chr13:64290980-64404330	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv900322	chr13:64290980-64411616	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv900323	chr13:64290980-64513203	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv482755	chr13:64292969-64396513	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv900324	chr13:64298853-64392087	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
17	nsv1052360	chr13:64301592-64392243	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1053812	chr13:64301592-64394120	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv1038263	chr13:64301592-64405310	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv1051772	chr13:64301592-64419179	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv1042787	chr13:64301592-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
22	esv2760302	chr13:64301604-64405322	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	esv2754198	chr13:64303507-64424251	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv1052379	chr13:64306174-64388259	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
25	nsv1044802	chr13:64306174-64392243	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
26	nsv900325	chr13:64310757-64404330	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
27	nsv900326	chr13:64310757-64411616	Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv1045877	chr13:64321869-64388259	Enhancers Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a
29	nsv1054354	chr13:64321869-64392243	Enhancers Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
30	nsv1042921	chr13:64321869-64405310	Active TSS Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
31	nsv1046923	chr13:64321869-64419179	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
32	nsv1048045	chr13:64321869-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
33	nsv1052785	chr13:64329019-64388259	Enhancers Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
34	nsv1036603	chr13:64329019-64405310	Enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
35	nsv1036453	chr13:64329019-64430033	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
36	nsv442313	chr13:64329093-64405322	Enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
37	nsv900328	chr13:64333042-64392087	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
38	nsv900329	chr13:64333042-64394905	Enhancers Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
39	nsv900330	chr13:64333042-64404330	Enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
40	nsv1049653	chr13:64344469-64388259	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
41	nsv1035939	chr13:64344469-64392243	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
42	nsv1039997	chr13:64344469-64394120	Enhancers Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
43	nsv1050344	chr13:64344469-64405310	Enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
44	nsv1044100	chr13:64344469-64419179	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
45	nsv1046914	chr13:64344469-64419543	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
46	nsv900331	chr13:64346536-64450375	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
47	nsv1043606	chr13:64355356-64405310	Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
48	nsv832633	chr13:64385305-64521487	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
49	nsv977251	chr13:64385372-64407800	Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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