Variant report

Variant	rs550890548
Chromosome Location	chr3:119606797-119606798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119605247..119607921-chr3:119609001..119610890,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	esv3386427	chr3:119606574-119606923	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119546000-119663400	Weak transcription	Lung	lung
2	chr3:119562400-119611000	Weak transcription	Fetal Stomach	stomach
3	chr3:119569400-119629400	Weak transcription	Esophagus	oesophagus
4	chr3:119574600-119631600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:119577600-119607600	Weak transcription	Aorta	Aorta
6	chr3:119577800-119607600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:119582400-119607400	Weak transcription	Ovary	ovary
8	chr3:119582400-119607600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:119582400-119607600	Weak transcription	Fetal Brain Female	brain
10	chr3:119582400-119607600	Weak transcription	Thymus	Thymus
11	chr3:119582400-119607800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr3:119582400-119610600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr3:119582400-119610600	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:119582400-119611000	Weak transcription	Brain Anterior Caudate	brain
15	chr3:119582400-119611000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:119582400-119611000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:119582400-119611000	Weak transcription	HUVEC	blood vessel
18	chr3:119582400-119624000	Weak transcription	Brain Germinal Matrix	brain
19	chr3:119582400-119626600	Weak transcription	Fetal Heart	heart
20	chr3:119582400-119629400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:119582600-119607600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:119582600-119607800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:119582600-119609800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:119582600-119610600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:119582600-119611000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr3:119582600-119611000	Weak transcription	NHLF	lung
27	chr3:119582600-119627200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr3:119582600-119627400	Weak transcription	Right Ventricle	heart
29	chr3:119582800-119607800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:119582800-119621200	Weak transcription	Fetal Intestine Large	intestine
31	chr3:119583000-119611000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr3:119583600-119608000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:119583600-119621400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:119583800-119630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr3:119584000-119622800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr3:119585600-119607800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:119592600-119617800	Weak transcription	Osteobl	bone
38	chr3:119594800-119610800	Weak transcription	Stomach Mucosa	stomach
39	chr3:119595800-119607600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:119595800-119607800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:119596000-119607000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:119596000-119607800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:119597600-119659000	Weak transcription	Gastric	stomach
44	chr3:119598200-119610000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:119599000-119607600	Weak transcription	Left Ventricle	heart
46	chr3:119599200-119607800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:119599800-119607800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:119599800-119611000	Weak transcription	Fetal Kidney	kidney
49	chr3:119599800-119611000	Weak transcription	NH-A	brain
50	chr3:119600000-119606800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links