Variant report

Variant	rs550961893
Chromosome Location	chr1:86402025-86402026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1011293	chr1:86270649-86416972	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv871189	chr1:86315724-86402244	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv870724	chr1:86352810-86402244	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv462395	chr1:86379514-86457334	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv546726	chr1:86379514-86457334	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv546727	chr1:86381650-86416725	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv522304	chr1:86385876-86402244	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv546728	chr1:86385876-86403759	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv546729	chr1:86385876-86404496	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv437701	chr1:86385876-86416343	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv546730	chr1:86392577-86403759	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv546731	chr1:86392577-86404029	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv546732	chr1:86392577-86404202	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv546733	chr1:86392577-86404307	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv1811992	chr1:86392577-86404496	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv546734	chr1:86392577-86404496	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv546735	chr1:86392577-86407135	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3397245	chr1:86398864-86403662	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv3529757	chr1:86399664-86405662	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv3320363	chr1:86400462-86404846	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
23	esv3320360	chr1:86400464-86406462	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
24	nsv10350	chr1:86400561-86404846	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
25	nsv823420	chr1:86400692-86404501	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	n/a
26	nsv819896	chr1:86400715-86405123	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
27	esv3320359	chr1:86400719-86404646	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers	n/a	n/a	inside rSNPs	n/a
28	esv3320358	chr1:86400736-86404624	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	n/a
29	esv10764	chr1:86400747-86404675	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
30	esv3529756	chr1:86400752-86404639	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	n/a
31	esv3320361	chr1:86400773-86404609	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	n/a
32	nsv823431	chr1:86400778-86404501	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
33	esv3320357	chr1:86400787-86404566	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	n/a
34	esv4489	chr1:86400800-86404711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	n/a
35	nsv508371	chr1:86400824-86430847	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
36	esv3320364	chr1:86400852-86404539	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
37	esv3529758	chr1:86400852-86404539	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
38	nsv823442	chr1:86400854-86404501	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
39	nsv823453	chr1:86400854-86404744	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86391000-86403200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:86399000-86402400	Enhancers	Fetal Lung	lung
3	chr1:86400200-86402800	Enhancers	Liver	Liver
4	chr1:86400600-86402600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:86401200-86403000	Enhancers	Adipose Nuclei	Adipose
6	chr1:86401200-86407400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:86401400-86402200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:86401600-86404800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:86401800-86404600	Weak transcription	Fetal Stomach	stomach
10	chr1:86402000-86405400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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