Variant report

Variant	rs551097728
Chromosome Location	chr10:50967486-50967487
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50967343..50969554-chr10:50974712..50977623,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1048905	chr10:50928727-51019190	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3331392	chr10:50967350-50967546	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50943200-50969400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:50944000-50969400	Weak transcription	Brain Substantia Nigra	brain
3	chr10:50951600-50969200	Weak transcription	Fetal Intestine Large	intestine
4	chr10:50952600-50968800	Weak transcription	Pancreas	Pancrea
5	chr10:50953400-50969400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:50955000-50967800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:50955000-50969000	Weak transcription	Ovary	ovary
8	chr10:50955000-50969400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:50960000-50969200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:50960400-50968000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:50960600-50969400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:50960800-50968400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:50960800-50969200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:50961000-50968600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:50965000-50967800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:50965000-50968200	Weak transcription	Brain Anterior Caudate	brain
17	chr10:50965000-50968600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:50965000-50969400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:50965000-50969600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:50965600-50968800	Weak transcription	Brain Germinal Matrix	brain
21	chr10:50965600-50969000	Weak transcription	Fetal Intestine Small	intestine
22	chr10:50965800-50967800	Weak transcription	Brain Angular Gyrus	brain
23	chr10:50966400-50968400	Enhancers	Liver	Liver
24	chr10:50966400-50968800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:50966400-50969000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:50966600-50968800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:50967000-50968600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:50967200-50969000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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