Variant report

Variant	rs551234779
Chromosome Location	chr3:136365516-136365517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136364480..136366014-chr3:136376930..136379520,2	MCF-7	breast:
2	chr3:136365030..136366947-chr3:136367021..136371094,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136347200-136368400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:136347600-136367200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:136348800-136373600	Weak transcription	Thymus	Thymus
4	chr3:136349800-136372400	Weak transcription	Dnd41	blood
5	chr3:136350600-136372200	Weak transcription	Primary T cells from cord blood	blood
6	chr3:136351600-136376200	Weak transcription	Esophagus	oesophagus
7	chr3:136352400-136371600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:136352400-136371600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:136352400-136371800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:136357800-136368200	Weak transcription	Lung	lung
11	chr3:136357800-136387400	Weak transcription	Fetal Thymus	thymus
12	chr3:136361400-136366200	Weak transcription	Fetal Stomach	stomach
13	chr3:136364000-136366200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:136364200-136368000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:136364400-136369400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:136364600-136371800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:136364800-136368000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:136364800-136372200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:136364800-136377800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:136365000-136370000	Weak transcription	Ovary	ovary
21	chr3:136365000-136396400	Weak transcription	Gastric	stomach
22	chr3:136365200-136368600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr3:136365200-136369800	Weak transcription	K562	blood
24	chr3:136365200-136370000	Weak transcription	Psoas Muscle	Psoas
25	chr3:136365200-136370600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr3:136365200-136381400	Weak transcription	Pancreas	Pancrea
27	chr3:136365400-136366800	Weak transcription	GM12878-XiMat	blood

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