Variant report

Variant	rs551723425
Chromosome Location	chr16:80574799-80574800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:352)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:352 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr16:80574561-80574884	MCF10A-Er-Src	breast:	n/a	n/a
2	ZBTB33	chr16:80574445-80574991	A549	lung:	n/a	n/a
3	TAF1	chr16:80574389-80574902	GM12891	blood:	n/a	n/a
4	BCLAF1	chr16:80574333-80574994	GM12878	blood:	n/a	n/a
5	SMC3	chr16:80574337-80575125	Hela-S3	cervix:	n/a	chr16:80574587-80574601 chr16:80575095-80575102 chr16:80575076-80575086
6	TAF1	chr16:80574447-80574809	GM12892	blood:	n/a	n/a
7	CBX3	chr16:80574273-80574937	K562	blood:	n/a	n/a
8	POLR2A	chr16:80574316-80575027	U87	brain:	n/a	n/a
9	GABPA	chr16:80574379-80574988	HepG2	liver:	n/a	chr16:80574841-80574855 chr16:80574844-80574853 chr16:80574844-80574855 chr16:80574844-80574858
10	E2F6	chr16:80574367-80575094	K562	blood:	n/a	chr16:80574957-80574966 chr16:80574845-80574854 chr16:80574706-80574717
11	HEY1	chr16:80574508-80574898	K562	blood:	n/a	n/a
12	POLR2A	chr16:80574278-80574923	GM12891	blood:	n/a	n/a
13	ELF1	chr16:80574473-80575128	SK-N-SH	brain:	n/a	n/a
14	HCFC1	chr16:80574413-80575028	K562	blood:	n/a	n/a
15	NFYB	chr16:80574527-80574891	Hela-S3	cervix:	n/a	n/a
16	FOXA2	chr16:80574699-80575039	HepG2	liver:	n/a	n/a
17	SIN3AK20	chr16:80574633-80575105	SK-N-SH	brain:	n/a	n/a
18	POLR2A	chr16:80574481-80575091	HUVEC	blood vessel:	n/a	n/a
19	FOXA1	chr16:80574655-80575103	T-47D	breast:	n/a	n/a
20	POLR2A	chr16:80574232-80575002	Hela-S3	cervix:	n/a	n/a
21	EBF1	chr16:80574534-80575005	GM12878	blood:	n/a	n/a
22	POLR2A	chr16:80574395-80574898	SK-N-MC	brain:	n/a	n/a
23	TBL1XR1	chr16:80574455-80574950	K562	blood:	n/a	n/a
24	RCOR1	chr16:80574392-80575026	Hela-S3	cervix:	n/a	n/a
25	STAT5A	chr16:80574414-80574855	GM12878	blood:	n/a	n/a
26	HDAC2	chr16:80574290-80575288	MCF-7	breast:	n/a	chr16:80574838-80574847
27	POLR2A	chr16:80574323-80575142	Hela-S3	cervix:	n/a	n/a
28	YY1	chr16:80574366-80574944	GM12878	blood:	n/a	n/a
29	GATA3	chr16:80574583-80575020	T-47D	breast:	n/a	n/a
30	MAX	chr16:80574230-80575172	HepG2	liver:	n/a	n/a
31	ELF1	chr16:80574332-80575104	K562	blood:	n/a	n/a
32	POLR2A	chr16:80574402-80575034	HL-60	blood:	n/a	n/a
33	YY1	chr16:80574396-80574925	SK-N-SH_RA	brain:	n/a	n/a
34	ETS1	chr16:80574534-80574986	A549	lung:	n/a	chr16:80574536-80574545 chr16:80574536-80574545 chr16:80574536-80574545 chr16:80574536-80574545 chr16:80574536-80574545 chr16:80574536-80574545
35	SIX5	chr16:80574529-80574923	A549	lung:	n/a	n/a
36	MYBL2	chr16:80574535-80575072	HepG2	liver:	n/a	n/a
37	POLR2A	chr16:80574165-80575113	GM12892	blood:	n/a	n/a
38	POLR2A	chr16:80574338-80575136	MCF-7	breast:	n/a	n/a
39	USF1	chr16:80574294-80574855	A549	lung:	n/a	n/a
40	SIN3AK20	chr16:80574716-80575108	K562	blood:	n/a	n/a
41	SIN3A	chr16:80574520-80575068	GM12878	blood:	n/a	n/a
42	GABPA	chr16:80574300-80575106	HL-60	blood:	n/a	chr16:80574841-80574855 chr16:80574844-80574853 chr16:80574844-80574855 chr16:80574844-80574858
43	MAZ	chr16:80574495-80574995	HepG2	liver:	n/a	n/a
44	POLR2A	chr16:80574230-80575036	GM12892	blood:	n/a	n/a
45	SIN3A	chr16:80574392-80575304	H1-hESC	embryonic stem cell:	n/a	n/a
46	POLR2A	chr16:80574407-80575164	H1-neurons	neurons:	n/a	n/a
47	MAX	chr16:80574372-80575031	K562	blood:	n/a	n/a
48	EP300	chr16:80574640-80574984	SK-N-SH_RA	brain:	n/a	chr16:80574878-80574887
49	POLR2A	chr16:80574547-80574926	ECC-1	luminal epithelium:	n/a	n/a
50	POLR2A	chr16:80574457-80574900	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:80574757-80574807	A549	lung:	n/a
2	chr16:80574757-80574807	Hela-S3	cervix:	n/a
3	chr16:80574757-80574807	Jurkat	blood:	n/a
4	chr16:80574757-80574807	GM06990	blood:	n/a
5	chr16:80574757-80574807	NHDF-neo	bronchial:	n/a
6	chr16:80574757-80574807	NT2-D1	testis:	n/a
7	chr16:80574757-80574807	MCF10A-Er-Src	breast:	n/a
8	chr16:80574757-80574807	AG09319	gingival:	n/a
9	chr16:80574757-80574807	HEEpiC	esophagus:	n/a
10	chr16:80574757-80574807	HMEC	breast:	n/a
11	chr16:80574757-80574807	PrEC	prostate:	n/a
12	chr16:80574757-80574807	AG04450	lung:	fetal
13	chr16:80574757-80574807	NH-A	brain:	n/a
14	chr16:80574757-80574807	NHBE	bronchial:	n/a
15	chr16:80574757-80574807	PANC-1	pancreas:	n/a
16	chr16:80574757-80574807	LNCaP	prostate:	n/a
17	chr16:80574757-80574807	ECC-1	luminal epithelium:	n/a
18	chr16:80574757-80574807	ProgFib	skin:	n/a
19	chr16:80574757-80574807	PFSK-1	brain:	n/a
20	chr16:80574757-80574807	MCF-7	breast:	n/a
21	chr16:80574757-80574807	HRPEpiC	eye:	n/a
22	chr16:80574757-80574807	ovcar-3	ovarian:	n/a
23	chr16:80574757-80574807	GM12892	blood:	n/a
24	chr16:80574757-80574807	H1-hESC	embryonic stem cell:	embryo
25	chr16:80574757-80574807	HUVEC	blood vessel:	n/a
26	chr16:80574757-80574807	HIPEpiC	eye:	n/a
27	chr16:80574757-80574807	Caco-2	colon:	n/a
28	chr16:80574757-80574807	SKMC	muscle:	n/a
29	chr16:80574757-80574807	SK-N-SH	brain:	n/a
30	chr16:80574757-80574807	HEK293	kidney:	embryo
31	chr16:80574757-80574807	HRCEpiC	kidney:	n/a
32	chr16:80574757-80574807	HCPEpiC	choroid plexus:	n/a
33	chr16:80574757-80574807	HAEpiC	amniotic membrane:	n/a
34	chr16:80574757-80574807	GM12878	blood:	n/a
35	chr16:80574757-80574807	HPAEpiC	pulmonary alveolar:	n/a
36	chr16:80574757-80574807	IMR90	lung:	fetal
37	chr16:80574757-80574807	AG10803	skin:	n/a
38	chr16:80574757-80574807	SAEC	small airway:	n/a
39	chr16:80574757-80574807	HepG2	liver:	n/a
40	chr16:80574757-80574807	GM12891	blood:	n/a
41	chr16:80574757-80574807	HCT-116	colon:	n/a
42	chr16:80574757-80574807	NB4	blood:	n/a
43	chr16:80574757-80574807	AG09309	skin:	n/a
44	chr16:80574757-80574807	AoSMC	blood vessel:	n/a
45	chr16:80574757-80574807	BJ	skin:	n/a
46	chr16:80574757-80574807	RPTEC	kidney:	n/a
47	chr16:80574757-80574807	HCF	heart:	n/a
48	chr16:80574757-80574807	SK-N-SH_RA	brain:	n/a
49	chr16:80574757-80574807	K562	blood:	n/a
50	chr16:80574757-80574807	HRE	kidney:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:80573239..80577400-chr16:80578381..80583465,6	MCF-7	breast:
2	chr16:80574441..80574962-chr2:58273829..58274361,2	Hela-S3	cervix:
3	chr16:80573192..80575392-chr16:80605742..80608359,2	MCF-7	breast:
4	chr16:80573111..80574963-chr16:80576346..80580119,3	K562	blood:
5	chr16:80573487..80575142-chr16:80836688..80838672,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDYL2-6	chr16:80574747-80574844	ENSG00000259867.1
2	lnc-CDYL2-6	chr16:80574747-80574850	ENSG00000259867.1

No data

Variant related genes	Relation type
ENSG00000259867	TF binding region
DYNLRB2	TF binding region
ENSG00000259867	CpG island
DYNLRB2	CpG island
ENSG00000166446	Chromatin interaction
ENSG00000168589	Chromatin interaction
ENSG00000028116	Chromatin interaction
ENSG00000260737	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv3431284	chr16:80574770-80575066	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80573800-80575000	Active TSS	Psoas Muscle	Psoas
2	chr16:80573800-80575000	Active TSS	Thymus	Thymus
3	chr16:80573800-80575400	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr16:80574000-80575000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr16:80574000-80575200	Active TSS	Brain Hippocampus Middle	brain
6	chr16:80574000-80575200	Active TSS	K562	blood
7	chr16:80574000-80575400	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr16:80574000-80575400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr16:80574000-80575400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr16:80574000-80575400	Active TSS	Muscle Satellite Cultured Cells	--
11	chr16:80574000-80575400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr16:80574000-80575400	Active TSS	Right Atrium	heart
13	chr16:80574000-80575400	Active TSS	Stomach Smooth Muscle	stomach
14	chr16:80574000-80575600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr16:80574000-80575600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr16:80574000-80575600	Active TSS	HSMMtube	muscle
17	chr16:80574200-80574800	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr16:80574200-80574800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr16:80574200-80574800	Flanking Active TSS	HMEC	breast
20	chr16:80574200-80575000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr16:80574200-80575000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr16:80574200-80575000	Active TSS	Fetal Muscle Leg	muscle
23	chr16:80574200-80575000	Active TSS	Fetal Thymus	thymus
24	chr16:80574200-80575000	Active TSS	GM12878-XiMat	blood
25	chr16:80574200-80575200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:80574200-80575200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr16:80574200-80575200	Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr16:80574200-80575200	Flanking Bivalent TSS/Enh	HepG2	liver
29	chr16:80574200-80575400	Active TSS	H9 Cell Line	embryonic stem cell
30	chr16:80574200-80575400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr16:80574200-80575400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr16:80574200-80575400	Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr16:80574200-80575400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr16:80574200-80575400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr16:80574200-80575400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr16:80574200-80575400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr16:80574200-80575400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr16:80574200-80575400	Active TSS	Colon Smooth Muscle	Colon
39	chr16:80574200-80575400	Active TSS	Fetal Brain Female	brain
40	chr16:80574200-80575400	Active TSS	Ovary	ovary
41	chr16:80574200-80575400	Active TSS	HSMM	muscle
42	chr16:80574200-80575400	Flanking Active TSS	HUVEC	blood vessel
43	chr16:80574200-80575400	Active TSS	NH-A	brain
44	chr16:80574200-80575400	Active TSS	NHDF-Ad	bronchial
45	chr16:80574200-80575400	Active TSS	NHLF	lung
46	chr16:80574200-80575600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr16:80574200-80575600	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr16:80574200-80575800	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr16:80574200-80575800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr16:80574200-80575800	Active TSS	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links