Variant report

Variant rs552120220
Chromosome Location chr5:142771593-142771594
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:142741600-142771600 Weak transcription Stomach Smooth Muscle stomach
2 chr5:142761200-142778600 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr5:142764400-142778200 Weak transcription Ovary ovary
4 chr5:142764600-142775200 Weak transcription HSMMtube muscle
5 chr5:142764800-142776400 Weak transcription Aorta Aorta
6 chr5:142764800-142777200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr5:142764800-142779800 Weak transcription Esophagus oesophagus
8 chr5:142765000-142774000 Weak transcription Primary neutrophils fromperipheralblood blood
9 chr5:142765400-142778000 Weak transcription Fetal Stomach stomach
10 chr5:142765600-142778200 Weak transcription Fetal Thymus thymus
11 chr5:142765800-142772600 Weak transcription Primary monocytes fromperipheralblood blood
12 chr5:142765800-142774800 Weak transcription Primary T cells fromperipheralblood blood
13 chr5:142765800-142775200 Weak transcription Thymus Thymus
14 chr5:142765800-142776400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr5:142765800-142778400 Weak transcription Placenta Placenta
16 chr5:142766000-142778200 Weak transcription Fetal Muscle Trunk muscle
17 chr5:142766200-142779800 Weak transcription Fetal Intestine Small intestine
18 chr5:142766400-142774400 Enhancers Primary T helper cells PMA-I stimulated --
19 chr5:142766400-142775200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
20 chr5:142766400-142775200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
21 chr5:142766600-142776200 Weak transcription Fetal Muscle Leg muscle
22 chr5:142766600-142778400 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr5:142766600-142779200 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr5:142766800-142774400 Weak transcription Primary B cells from peripheral blood blood
25 chr5:142767200-142775200 Weak transcription NH-A brain
26 chr5:142767200-142777200 Weak transcription K562 blood
27 chr5:142767200-142779400 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr5:142767200-142779400 Weak transcription Stomach Mucosa stomach
29 chr5:142767400-142772800 Weak transcription HMEC breast
30 chr5:142767400-142772800 Weak transcription NHEK skin
31 chr5:142767400-142773800 Weak transcription Duodenum Mucosa Duodenum
32 chr5:142767600-142772800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr5:142767600-142773800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr5:142767600-142778000 Enhancers Fetal Heart heart
35 chr5:142768200-142772800 Weak transcription Placenta Amnion Placenta Amnion
36 chr5:142768200-142773800 Enhancers Adipose Nuclei Adipose
37 chr5:142768400-142771600 Enhancers Breast Myoepithelial Primary Cells Breast
38 chr5:142768600-142776000 Enhancers Primary T helper naive cells fromperipheralblood blood
39 chr5:142768800-142772800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr5:142768800-142774000 Weak transcription Primary B cells from cord blood blood
41 chr5:142769000-142774800 Enhancers Primary T helper cells fromperipheralblood blood
42 chr5:142769000-142779400 Weak transcription Gastric stomach
43 chr5:142769200-142775000 Weak transcription Primary hematopoietic stem cells blood
44 chr5:142769400-142775000 Weak transcription Right Atrium heart
45 chr5:142769400-142775200 Weak transcription Right Ventricle heart
46 chr5:142769600-142771800 Active TSS GM12878-XiMat blood
47 chr5:142769600-142772200 Weak transcription Brain Anterior Caudate brain
48 chr5:142769600-142772800 Weak transcription Primary T killer memory cells from peripheral blood blood
49 chr5:142769600-142772800 Weak transcription Brain Cingulate Gyrus brain
50 chr5:142769600-142772800 Weak transcription Monocytes-CD14+_RO01746 blood

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