Variant report

Variant	rs552210787
Chromosome Location	chr7:105161277-105161278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:104653151..104655503-chr7:105160083..105164345,7	K562	blood:
2	chr7:105148185..105149870-chr7:105160014..105161672,2	K562	blood:
3	chr7:105143860..105147794-chr7:105158802..105162576,5	K562	blood:
4	chr7:105160261..105165362-chr7:105168599..105174293,22	MCF-7	breast:
5	chr7:105160711..105163604-chr7:105655467..105658687,3	K562	blood:
6	chr7:105160926..105162522-chr7:105329627..105332211,2	K562	blood:
7	chr7:105158727..105165017-chr7:105166972..105176993,56	K562	blood:
8	chr7:105159598..105163989-chr7:105219696..105223115,7	MCF-7	breast:
9	chr7:105083591..105086006-chr7:105160365..105162043,2	K562	blood:
10	chr7:105161082..105163079-chr7:105240360..105242686,2	K562	blood:
11	chr7:104652163..104655972-chr7:105160292..105163807,4	MCF-7	breast:
12	chr7:105160687..105164718-chr7:105170642..105174239,14	MCF-7	breast:
13	chr7:104653054..104655993-chr7:105161169..105164095,3	MCF-7	breast:
14	chr7:105161102..105162655-chr7:105181498..105183213,2	K562	blood:
15	chr7:104653151..104655346-chr7:105160083..105164134,5	K562	blood:
16	chr7:105148472..105150405-chr7:105160556..105162918,2	MCF-7	breast:
17	chr7:105027746..105030082-chr7:105160759..105163665,5	MCF-7	breast:
18	chr7:104772977..104775390-chr7:105160456..105162601,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000128536	Chromatin interaction
ENSG00000135249	Chromatin interaction
ENSG00000135250	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000185055	Chromatin interaction
ENSG00000091127	Chromatin interaction
ENSG00000228393	Chromatin interaction
ENSG00000146776	Chromatin interaction
ENSG00000239569	Chromatin interaction
ENSG00000223886	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv1022065	chr7:104997315-105190662	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv888929	chr7:105012975-105163091	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv888930	chr7:105012975-105170476	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv888931	chr7:105012975-105173974	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv888932	chr7:105012975-105179756	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv888933	chr7:105012975-105193051	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv1023564	chr7:105018484-105182998	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
14	nsv464668	chr7:105088693-105208492	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv608069	chr7:105088693-105208492	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv888935	chr7:105110990-105193051	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
17	nsv888936	chr7:105119308-105193051	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
18	esv1793037	chr7:105137305-105167132	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
19	nsv8197	chr7:105160920-105166965	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105124400-105161800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr7:105128600-105161600	Weak transcription	Brain Substantia Nigra	brain
3	chr7:105134800-105161600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:105141000-105161800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:105141400-105161400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:105141600-105161400	Weak transcription	Primary B cells from cord blood	blood
7	chr7:105143000-105161600	Weak transcription	Aorta	Aorta
8	chr7:105143000-105161800	Weak transcription	Thymus	Thymus
9	chr7:105143400-105161400	Weak transcription	Fetal Brain Female	brain
10	chr7:105143800-105161400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:105146200-105161400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:105146200-105161400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr7:105146200-105161600	Weak transcription	Fetal Intestine Large	intestine
14	chr7:105146200-105161800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:105147400-105161600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:105149000-105161400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr7:105149000-105161400	Weak transcription	Primary T cells from cord blood	blood
18	chr7:105149000-105161400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:105149000-105161400	Weak transcription	Adipose Nuclei	Adipose
20	chr7:105149000-105161600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:105153800-105161600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:105157800-105161600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr7:105160400-105161400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:105160400-105161400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:105160600-105161400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:105161000-105161400	Enhancers	NH-A	brain
27	chr7:105161000-105161600	Enhancers	Psoas Muscle	Psoas
28	chr7:105161200-105161400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:105161200-105161400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:105161200-105161400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:105161200-105161400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:105161200-105161400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:105161200-105161400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:105161200-105161400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:105161200-105161400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:105161200-105161400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr7:105161200-105161400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:105161200-105161400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:105161200-105161400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:105161200-105161400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:105161200-105161400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:105161200-105161400	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr7:105161200-105161400	Active TSS	Duodenum Mucosa	Duodenum
44	chr7:105161200-105161400	Flanking Active TSS	Fetal Brain Male	brain
45	chr7:105161200-105161400	Enhancers	Fetal Lung	lung
46	chr7:105161200-105161400	Enhancers	Fetal Stomach	stomach
47	chr7:105161200-105161400	Enhancers	Lung	lung
48	chr7:105161200-105161400	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr7:105161200-105161400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr7:105161200-105161400	Enhancers	Skeletal Muscle Male	skeletal muscle

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