Variant report

Variant	rs552334689
Chromosome Location	chr14:35527628-35527629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35524936..35527808-chr14:35546522..35548065,2	MCF-7	breast:
2	chr14:35519075..35520594-chr14:35524910..35527892,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv901607	chr14:35449467-35540764	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv901608	chr14:35449467-35571651	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv901609	chr14:35449467-35587767	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv456204	chr14:35466584-35556498	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv564263	chr14:35466584-35556498	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv901611	chr14:35470049-35540764	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv901612	chr14:35470049-35571651	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv901613	chr14:35470049-35587767	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv564264	chr14:35482797-35732369	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
14	nsv901614	chr14:35485748-35571651	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv901615	chr14:35485748-35630175	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
16	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
17	nsv1043801	chr14:35493065-35539399	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
18	nsv1052800	chr14:35509858-35607117	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
19	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
20	nsv564265	chr14:35512335-35624831	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
21	nsv1046992	chr14:35527239-35724227	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35516400-35527800	Weak transcription	Esophagus	oesophagus
2	chr14:35516400-35531000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:35516400-35531000	Weak transcription	Gastric	stomach
4	chr14:35516400-35537600	Weak transcription	Ovary	ovary
5	chr14:35516400-35552600	Weak transcription	Spleen	Spleen
6	chr14:35516600-35528400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:35516600-35529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:35516600-35530000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:35516600-35537400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:35516800-35527800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:35516800-35527800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:35516800-35530800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:35516800-35536800	Weak transcription	Fetal Kidney	kidney
14	chr14:35516800-35537200	Weak transcription	Fetal Brain Male	brain
15	chr14:35516800-35537600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:35516800-35551200	Weak transcription	Right Ventricle	heart
17	chr14:35516800-35552200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr14:35517000-35531000	Weak transcription	Pancreas	Pancrea
19	chr14:35517200-35527800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:35517200-35547200	Weak transcription	Brain Anterior Caudate	brain
21	chr14:35517400-35528200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr14:35517400-35530200	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:35517400-35530200	Weak transcription	HMEC	breast
24	chr14:35517400-35530200	Weak transcription	NH-A	brain
25	chr14:35517400-35537600	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:35517400-35544000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:35517400-35578800	Weak transcription	Stomach Mucosa	stomach
28	chr14:35517600-35530200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr14:35517600-35536400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:35517600-35537600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr14:35517600-35537600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr14:35517600-35545800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr14:35517600-35554400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:35517800-35531400	Strong transcription	Fetal Stomach	stomach
35	chr14:35518000-35528400	Weak transcription	Aorta	Aorta
36	chr14:35518000-35529800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:35518000-35547400	Weak transcription	GM12878-XiMat	blood
38	chr14:35518200-35530000	Weak transcription	Fetal Heart	heart
39	chr14:35519000-35529200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:35519400-35532000	Strong transcription	Placenta	Placenta
41	chr14:35519600-35531800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:35520200-35550800	Weak transcription	NHLF	lung
43	chr14:35520400-35527800	Weak transcription	HUVEC	blood vessel
44	chr14:35520400-35529800	Weak transcription	Hela-S3	cervix
45	chr14:35520600-35531000	Weak transcription	Right Atrium	heart
46	chr14:35521000-35530200	Weak transcription	K562	blood
47	chr14:35521000-35559400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:35521600-35528400	Strong transcription	HepG2	liver
49	chr14:35521600-35531800	Strong transcription	Liver	Liver
50	chr14:35521600-35540800	Strong transcription	Primary neutrophils fromperipheralblood	blood

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