Variant report

Variant	rs552486444
Chromosome Location	chr4:87528538-87528539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87526249..87528781-chr4:87528891..87530850,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv879522	chr4:87473776-87644842	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv822635	chr4:87479576-87622176	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv879523	chr4:87517609-87594472	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv879524	chr4:87517609-87603929	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv968065	chr4:87528229-87536585	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87517000-87536600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:87517200-87529800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:87519000-87529200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:87519000-87530000	Weak transcription	Osteobl	bone
5	chr4:87519400-87529600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:87519600-87529800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:87520200-87528600	Weak transcription	Ovary	ovary
8	chr4:87521400-87532800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:87521400-87546800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr4:87521800-87535200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:87521800-87536000	Weak transcription	Fetal Kidney	kidney
12	chr4:87523400-87528600	Weak transcription	Brain Substantia Nigra	brain
13	chr4:87523600-87528600	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:87523600-87528800	Weak transcription	Brain Anterior Caudate	brain
15	chr4:87524200-87529800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:87524200-87531800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:87524200-87540800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:87525600-87540200	Weak transcription	NHEK	skin
19	chr4:87525800-87532600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:87526200-87531800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:87526400-87529800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:87526600-87529800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:87526600-87529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr4:87526600-87530000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:87526600-87531000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:87526600-87532000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr4:87526600-87532600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:87526600-87537400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:87526800-87529400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr4:87526800-87529800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:87527600-87528600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr4:87527600-87529000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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