Variant report

Variant	rs552703304
Chromosome Location	chr5:178112284-178112285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1023697	chr5:178070594-178126328	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537972	chr5:178070594-178126328	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv5155	chr5:178075100-178132799	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv883217	chr5:178099758-178193081	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1820003	chr5:178103405-178113183	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1822037	chr5:178103405-178113183	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1823571	chr5:178103405-178113183	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1837537	chr5:178103405-178122284	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1840322	chr5:178103405-178122284	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv600428	chr5:178103564-178113126	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv600429	chr5:178103564-178113183	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1823842	chr5:178105326-178113183	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1843063	chr5:178105326-178117482	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3468604	chr5:178107146-178113544	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3375509	chr5:178108146-178114494	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3383403	chr5:178108396-178114419	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3470827	chr5:178108962-178113608	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3367716	chr5:178109005-178114254	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3470826	chr5:178109048-178113416	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3470828	chr5:178109048-178113416	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv499214	chr5:178109061-178113417	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv16163	chr5:178109175-178113319	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv820344	chr5:178109175-178113753	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3468603	chr5:178109371-178112719	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
27	esv3468605	chr5:178109371-178112719	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
28	nsv442971	chr5:178109975-178113163	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
29	esv3468608	chr5:178110146-178115244	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
30	esv3468606	chr5:178110871-178114719	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
31	esv3468609	chr5:178110871-178114719	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
32	nsv600431	chr5:178111284-178112569	Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
33	nsv600432	chr5:178111284-178112675	Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
34	nsv600433	chr5:178111284-178112786	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
35	nsv600434	chr5:178111284-178113016	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
36	nsv600435	chr5:178111284-178113126	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
37	esv1798252	chr5:178111284-178113183	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
38	esv1798459	chr5:178111284-178113183	Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
39	esv1799649	chr5:178111284-178113183	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
40	esv1816334	chr5:178111284-178113183	Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
41	esv1816761	chr5:178111284-178113183	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
42	esv1816957	chr5:178111284-178113183	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
43	esv1817006	chr5:178111284-178113183	Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
44	esv1818912	chr5:178111284-178113183	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
45	esv1820275	chr5:178111284-178113183	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
46	esv1821435	chr5:178111284-178113183	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
47	esv1822125	chr5:178111284-178113183	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
48	esv1822152	chr5:178111284-178113183	Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
49	esv1822179	chr5:178111284-178113183	Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
50	esv1822348	chr5:178111284-178113183	Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178110200-178113200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:178111600-178113400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr5:178112000-178115400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:178112200-178112800	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links